View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16715_low_2 (Length: 600)
Name: NF16715_low_2
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Original strand, 49297928 - 49298488
Alignment:
| Q |
18 |
atcatcgccatcctttccccacgtttgccactagatgtggatcgtatcatatgttctcaaatgatgagaaattagtgggaagattctttctcttcccaca |
117 |
Q |
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| T |
49297928 |
atcatcgccatcctttcttcacgtttgccactggatgtggatcgtatcatatgttctcaaatgatgagaaatcagtgagaagattctttctcttcccaca |
49298027 |
T |
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| Q |
118 |
tacggtgccaaatgttccttctagatgacacctagtgttccggcctttcttcattaacaaatctggaaacaaaagatatgagtttgttttattaaagaag |
217 |
Q |
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| T |
49298028 |
tacggtgccaaatgttccttctagatgacacctagtgttccggcctttcttcattaacaaatcaggaaacaaaagatatgagtgtgttttattaaagaag |
49298127 |
T |
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| Q |
218 |
ctaaaacttaaaagtaataattaag-nnnnnnnntaatcacatggattgccgttgccgtttatagagatataccaagacattgaatttcttccttattcc |
316 |
Q |
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| T |
49298128 |
ctaaaacttaaaagtaataattaagaaaaaaaaataatcacatggattgccgttgccgtttatagagatataccaagacattgaatttcttccttattcc |
49298227 |
T |
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| Q |
317 |
gtgcaaaacttccctgttttgggcgggaaatcaagttaatacctttttcgtttttgatcatgatcctcacgcggttaagagagtcatttcaataacatta |
416 |
Q |
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| T |
49298228 |
gtgcaaaacttccctgttttgggcgggaaatcaagttaatacctttttcgttttcgatcatgatcctcacgcggttaagagagtcatttcaattac---a |
49298324 |
T |
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| Q |
417 |
ttcacagggtcaaaatagtcattagagtttacactcgttcaaatattgacgacannnnnnnnnnnnnnnnnacatatacaatgatatcggtaacaaaaaa |
516 |
Q |
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| T |
49298325 |
ttcacagggtcaaaatagtcattagagtttacactcgttcaaatattgacgac-------ggtgcccccctccatatacaatgat-tcgataacaaaaaa |
49298416 |
T |
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| Q |
517 |
gtttctaaacagaaagatatgatcacatctatatctccatcactataccatagctcacattcacttcatctc |
588 |
Q |
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| T |
49298417 |
gtttctaaacagaaagatatgataacatctatatctccatcactataccatagctcatattcacttcatctc |
49298488 |
T |
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