View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16715_low_5 (Length: 410)
Name: NF16715_low_5
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 34722408 - 34722794
Alignment:
| Q |
7 |
tagattattctattacttaggtcggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
106 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34722408 |
tagactattctattacttaggctggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
34722507 |
T |
|
| Q |
107 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34722508 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcagtcactaatctaccaacactccaa |
34722607 |
T |
|
| Q |
207 |
acactaatctcctctcttctctccctttgcactgggtcgctcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34722608 |
acactaatctcctctcttctctccctttgcaatgcgtcgctcaggtaacatttttgtgcatactcactactactctgatagtcttttccttctcttcaat |
34722707 |
T |
|
| Q |
307 |
agctgaatcagatggattagaaataatgggnnnnnnnggtccaatttgtgaaatccatgatcaaatggcgctattgatactgtaatt |
393 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34722708 |
agctgaatcagatggattagaaagaatgggtttttttggtctaatttgtgaaatccatgatcaaagggcgctattgatactgtaatt |
34722794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 19613715 - 19613948
Alignment:
| Q |
7 |
tagattattctattacttaggtcggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
106 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19613715 |
tagactattctattacttaggccggttttgtcagctgaaa---------tttgtctcatcagttaccaaagcaaactagccatctatcaaagtaccaagt |
19613805 |
T |
|
| Q |
107 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19613806 |
accaagagcgtgtttaattctttcttactccccaatgatggcttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
19613905 |
T |
|
| Q |
207 |
acactaatctcctctcttctctccctttgcactgggtcgctca |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
19613906 |
acactaatcccctctcttctctccctttgcaatgcgtcgctca |
19613948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 251 - 393
Target Start/End: Original strand, 19614051 - 19614192
Alignment:
| Q |
251 |
gtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatgggnnnnnnnggtccaa |
350 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
19614051 |
gtaacatttttttgtatactcactactactttgatagtattttccttctcttcaatagctgaatcagatagattagaaagaatggg-ttttttggtccaa |
19614149 |
T |
|
| Q |
351 |
tttgtgaaatccatgatcaaatggcgctattgatactgtaatt |
393 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
19614150 |
tttgtgaaatccataatcaaagggcgctattgatactgtaatt |
19614192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 44722235 - 44722150
Alignment:
| Q |
251 |
gtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatggg |
336 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | | ||||||||| |||||| |
|
|
| T |
44722235 |
gtaacattttcgtgtatactcactgctactctgatactcttttccttctcttcaattgttgaatgaattagattagaaagaatggg |
44722150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 30671137 - 30671523
Alignment:
| Q |
7 |
tagattattctattacttaggtcggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
106 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30671137 |
tagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
30671236 |
T |
|
| Q |
107 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30671237 |
accaagagcgtgtttaattctttcttactccc-aatgatgacttttgctattaaactgaaggaatcaaatggttcattcactaatctaccaacactccaa |
30671335 |
T |
|
| Q |
207 |
acactaatctcctctcttctctccctttgcactgggtcgctcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30671336 |
acactaatctcctctcttctctccctttgcaatgcgtcgctcaggtaacatttttgtgcatactcactactactctgatagtcttttccttctcttcaat |
30671435 |
T |
|
| Q |
307 |
agctgaatcagatggattagaaataatggg-nnnnnnnggtccaatttgtgaaatccatgatcaaatggcgctattgatactgtaatt |
393 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
30671436 |
agctgaatcagatggattagaaagaatgggttttttttggtcctatttgtgaaatccatgatcaaagggcgctattgataatgtaatt |
30671523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 22060455 - 22060696
Alignment:
| Q |
7 |
tagattattctattacttaggtcggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
106 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22060455 |
tagactattctattacttaggctggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
22060554 |
T |
|
| Q |
107 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22060555 |
accaagagcgtgtttaattctttcttac-ccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
22060653 |
T |
|
| Q |
207 |
acactaatctcctctcttctctccctttgcactgggtcgctca |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
22060654 |
acactaatcccctctcttctctccctttgcaatgcgtcgctca |
22060696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 247 - 393
Target Start/End: Original strand, 22060797 - 22060942
Alignment:
| Q |
247 |
tcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatgggnnnnnnnggt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||| |
|
|
| T |
22060797 |
tcaggtaacatttttgtgtatactcactactactctgatagtcttttcattctcttcaatagctgaatcagatagattagaaagaatggg-gtttttggt |
22060895 |
T |
|
| Q |
347 |
ccaatttgtgaaatccatgatcaaatggcgctattgatactgtaatt |
393 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
22060896 |
ccaatttgcgaaatccatgatcaaagggcgctattgatattgtaatt |
22060942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 25344264 - 25344502
Alignment:
| Q |
13 |
attctattacttaggtcggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaag |
112 |
Q |
| |
|
|||||||||||| || ||||||||||| || |||| ||||| ||| ||| ||||||| |||| |||| | |||||| ||| ||||||||||||||| |
|
|
| T |
25344264 |
attctattactttggccggttttgtcaacttaaactcttcaaatcactc--atcagttgccaaggcaa----gtcaactaacaa-gtaccaagtaccaag |
25344356 |
T |
|
| Q |
113 |
agc--gtgtttaattctttcttactc-------cccaatgatgacttttgctattaaattgaaggaatcaaatggttcatt---cactaatctaccaaca |
200 |
Q |
| |
|
||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
25344357 |
agcacgtgtttaattctttctttctttcttactcccactgatgacttttgctattaaattgaaggaatcagatgattcattattcactaatctaccaaca |
25344456 |
T |
|
| Q |
201 |
ctccaaacactaatctcctctcttctctccctttgcactgggtcgc |
246 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
25344457 |
ctccaaacactaatcacctctcttctctccctttgcaatgcgtcgc |
25344502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 25344610 - 25344698
Alignment:
| Q |
247 |
tcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatgg |
335 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| | | ||| |||||||||||| ||| ||||| || |||||||| ||||| |
|
|
| T |
25344610 |
tcaggtaacattttcatgtatacccactactactctgacacccgtttgcttctcttcaatcgctaaatcaaataaattagaaagaatgg |
25344698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 11662820 - 11662587
Alignment:
| Q |
7 |
tagattattctattacttaggtcggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagt |
106 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11662820 |
tagactattctattacttaggccggttttgtcagctgaaa---------tcgctctcatcagttaccaaagcaaactagccatctatcaaagtaccaagt |
11662730 |
T |
|
| Q |
107 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11662729 |
accaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaa |
11662630 |
T |
|
| Q |
207 |
acactaatctcctctcttctctccctttgcactgggtcgctca |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
11662629 |
acactaatcccctctcttctctccctttgcaatgcgtcgctca |
11662587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 251 - 393
Target Start/End: Complemental strand, 11662484 - 11662343
Alignment:
| Q |
251 |
gtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatgggnnnnnnnggtccaa |
350 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
11662484 |
gtaacatttttttgtatactcactactactttgatagtattttccttctcttcaatagctgaatcagatagattagaaagaatggg-ttttttggtccaa |
11662386 |
T |
|
| Q |
351 |
tttgtgaaatccatgatcaaatggcgctattgatactgtaatt |
393 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
11662385 |
tttgtgaaatccataatcaaagggcgctattgatactgtaatt |
11662343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 24946519 - 24946634
Alignment:
| Q |
124 |
ttctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcatt---cactaatctaccaacactccaaacactaatctcctc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24946519 |
ttctttcttactccc-aatgatgacttttgctattaaattgaaggaataagatgattcattattcactaatctaccaacactccaaacactaatcacctc |
24946617 |
T |
|
| Q |
221 |
tcttctctccctttgca |
237 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24946618 |
tcttctctccctttgca |
24946634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 24946742 - 24946830
Alignment:
| Q |
247 |
tcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatgg |
335 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| | || ||| |||||||||||| ||||||||| || |||||||| ||||| |
|
|
| T |
24946742 |
tcaggtaacattttcgtgtatacccactactactctgacactcatttacttctcttcaatcgctgaatcaaataaattagaaagaatgg |
24946830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 18347635 - 18347725
Alignment:
| Q |
144 |
atgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctcttctctcccttt |
234 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18347635 |
atgacttttgctactaaattgaaggaatcagatagttcatttcttaatctaccagcactccaaacactaatcacctctcttctctcccttt |
18347725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 18347863 - 18347946
Alignment:
| Q |
251 |
gtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatg |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||| || ||||||||| |||| |
|
|
| T |
18347863 |
gtaacattttcgtgtatactcactactactttgatactcttttccttctcctcaatcactgaatcaaatagattagaaagaatg |
18347946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 43304752 - 43304837
Alignment:
| Q |
251 |
gtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaataatggg |
336 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | | ||||||||| |||||| |
|
|
| T |
43304752 |
gtaacattttcgtgtatactcactgctactctgatactcttttccttctcttcaattgttgaatgaattagattagaaagaatggg |
43304837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 40354488 - 40354425
Alignment:
| Q |
251 |
gtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaat |
314 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||| ||| | ||||||||||||||| | ||||||| |
|
|
| T |
40354488 |
gtaatatttttgagtatactcattactactctaatacttttttccttctcttcagtcgctgaat |
40354425 |
T |
|
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 12867318 - 12867236
Alignment:
| Q |
247 |
tcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaa |
329 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| | | ||| |||||||||||| ||||||||| || |||||||| |
|
|
| T |
12867318 |
tcaggtaacattttcgtttatacccactactactctgacacccgtttgcttctcttcaatcgctgaatcaaataaattagaaa |
12867236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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