View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16715_low_7 (Length: 371)
Name: NF16715_low_7
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16715_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 7962941 - 7962589
Alignment:
| Q |
16 |
acacccaccttaatttattccatggtatgatgatgtttcattcacacatgaagggtcaatgtctttagttttcagccagtcactagaagttgaggacaat |
115 |
Q |
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| T |
7962941 |
acacccaccttaatttattccacggtatgatgatgtttcattcacacatgaagggtcaatatctttagttttcagccagtcactagaagttcaggacaat |
7962842 |
T |
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| Q |
116 |
cagaaagttttaattttcagctacctttccattgattaaataaccaaaaatgaatattatcttggca-----aattgatcagaagttagcacacacatat |
210 |
Q |
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| T |
7962841 |
cagaaagttttaattttcagctacctttccattgattaaataaccaaaaatgaatattatcttggcaaatataattgatcagaagttagcacacacatat |
7962742 |
T |
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| Q |
211 |
acatatacaattagtagtaggtgggatccatacacaaagtttgacatcaaattgggttccaccttccaccacactttgatcatcattttgggtgtcacgc |
310 |
Q |
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| T |
7962741 |
acatatacaattagtagtaggtgggatccatacacaaagtttgacatcaaattgggttccaccttccaccacactttgatcatcattttgggtgtcacgc |
7962642 |
T |
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| Q |
311 |
gtgagcattgcacaacaaggtatacactttacaacattctaactcccatctctct |
365 |
Q |
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| T |
7962641 |
gtgagcattgcacaacaaggtat--actttacaacattctaactcccatctctct |
7962589 |
T |
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