View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16715_low_9 (Length: 330)

Name: NF16715_low_9
Description: NF16715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16715_low_9
NF16715_low_9
[»] chr1 (4 HSPs)
chr1 (17-115)||(574371-574469)
chr1 (75-122)||(30780985-30781032)
chr1 (75-123)||(36385667-36385715)
chr1 (75-123)||(38688642-38688690)
[»] scaffold0129 (1 HSPs)
scaffold0129 (75-123)||(43219-43267)
[»] chr3 (1 HSPs)
chr3 (75-122)||(45297549-45297596)
[»] chr6 (1 HSPs)
chr6 (75-122)||(28975340-28975387)
[»] chr5 (2 HSPs)
chr5 (75-122)||(4301905-4301952)
chr5 (75-122)||(12201377-12201424)
[»] chr4 (1 HSPs)
chr4 (75-122)||(41261891-41261938)
[»] chr2 (1 HSPs)
chr2 (75-116)||(43790430-43790471)


Alignment Details
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 574371 - 574469
Alignment:
Q  17 agtgtagacaaactatagtaagatcaatgtttctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctccttttccatattaaa 115  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||       |||||| ||||||  |||||||||||||||  |||||||||    
T  574371 agtgtagactgactatagtaagatcaatgtttctatgtaatttaatggttgaaaaaaactttcctatgataaaaaacaactctcctttctcatattaaa 574469  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 30780985 - 30781032
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 122  Q
    |||||||||||| ||||||||||||||||| |||| ||||||| ||||    
T  30780985 ctttcccatgatgggaaacaactctcctttcccatgttaaacctcacc 30781032  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 36385715 - 36385667
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 123  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||    
T  36385715 ctttcccatgatggaaaacaacttcccttttccatactaaaccccacca 36385667  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 38688642 - 38688690
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 123  Q
    ||||||||| || |||||||||| | |||| ||||||||||||||||||    
T  38688642 ctttcccatcatgggaaacaacttttctttcccatattaaaccccacca 38688690  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 43219 - 43267
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 123  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  43219 ctttcccatgatgggaaacaactccccttttccatactaaaccccacca 43267  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 45297596 - 45297549
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 122  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  45297596 ctttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 28975387 - 28975340
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 122  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||||||    
T  28975387 cttttccatgataggaaacaactctcctttcccatgctaaaccccacc 28975340  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 4301952 - 4301905
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 122  Q
    |||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  4301952 ctttcccatgatgggaaagaacttcccttttccatattaaaccccacc 4301905  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 12201424 - 12201377
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 122  Q
    ||||| |||| ||||||||||||||||||| ||||| |||||||||||    
T  12201424 ctttctcatggtaggaaacaactctcctttcccatactaaaccccacc 12201377  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 41261891 - 41261938
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 122  Q
    |||||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  41261891 ctttcccatggtaggaaacaactctcatttcccatactaaaccccacc 41261938  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 43790430 - 43790471
Alignment:
Q  75 ctttcccatgataggaaacaactctccttttccatattaaac 116  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  43790430 ctttcccatgataggaaagaacttcccttttccatattaaac 43790471  T

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