View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16716_low_1 (Length: 438)
Name: NF16716_low_1
Description: NF16716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16716_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 53499975 - 53499557
Alignment:
| Q |
1 |
tgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaattgagtctttgtgaacaatttc |
100 |
Q |
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| T |
53499975 |
tgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaat-gagtctttgtgaacaatttc |
53499877 |
T |
|
| Q |
101 |
ctttgtaatttgatattttaaaaaatcatttttagtcaccaccttgtggttttatttaacttaaattagttatggacttccttttttgcttctggtgcat |
200 |
Q |
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| T |
53499876 |
ctttgtaatttgatattttaaaaaatcatttttagtcaccaccttgtggttttatttaacttaaattagttatggacttccttttttgcttctggtgcat |
53499777 |
T |
|
| Q |
201 |
acagtttactaatactaataacatgttcatattttccacccaagcacggagattggtcatctcttatattgtttttcaaaatactctaaactgttattgt |
300 |
Q |
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| T |
53499776 |
acaatttactaatactaa---catgttcatattttccacccaagcacggagattggtcaactcttatattgtttttcaaaatactctaaactgttattgt |
53499680 |
T |
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| Q |
301 |
ttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaagggtacaaaaagtgaaatggagacatttgg |
400 |
Q |
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| T |
53499679 |
ttcaggctcttgagatattggaattatataggcgtatatacgaagagtatttggccgttcctgtcataaagggtacaaaaagtgaaatggagacatttgg |
53499580 |
T |
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| Q |
401 |
cggtgcaatttacaccaacactg |
423 |
Q |
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| T |
53499579 |
cggtgcaatttacaccaacactg |
53499557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 272 - 418
Target Start/End: Complemental strand, 16070806 - 16070661
Alignment:
| Q |
272 |
tttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaag |
371 |
Q |
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| T |
16070806 |
tttttcaaaatactctggattgttgtt-tttcaggctctcgagatattggaattatataggcgtatatacgaagagtatttggcagttcctgtcataaag |
16070708 |
T |
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| Q |
372 |
ggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaa |
418 |
Q |
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| T |
16070707 |
ggtacgaaaagtgtaggggatacttgtggcggtgcaattttcaccaa |
16070661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 53491976 - 53491898
Alignment:
| Q |
1 |
tgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaat |
79 |
Q |
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| T |
53491976 |
tgaagcacatgcagaggtattccgtcaagtagttattttaggaatctgccttaatatatgcatctttggcatctgtaat |
53491898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 16071199 - 16071131
Alignment:
| Q |
2 |
gaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggc |
70 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||| |||||| |
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| T |
16071199 |
gaagcagatgcagaggtattccatcaagtagttgttttaggaatttgccttaatatttgcatatttggc |
16071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 53516572 - 53516521
Alignment:
| Q |
304 |
aggctcttgagatattggaattatataggtgtatatacgaagagtatttggc |
355 |
Q |
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||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
53516572 |
aggctcttgagatattggaattatacaggcatatgtacgaagagtatttggc |
53516521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 385
Target Start/End: Original strand, 45354663 - 45354776
Alignment:
| Q |
272 |
tttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaag |
371 |
Q |
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|||||| |||| |||||||| | ||||||||||| |||||||| |||||||||||| || |||| || |||||||||||||| ||||||||| ||||| |
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| T |
45354663 |
tttttctaaatgttctaaactataattgtttcaggtgcttgagattttggaattatatcggcgtatctatgaagagtatttggcagttcctgtcgtaaag |
45354762 |
T |
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| Q |
372 |
ggtacaaaaagtga |
385 |
Q |
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|||| |||||||| |
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| T |
45354763 |
ggtaagaaaagtga |
45354776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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