View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16716_low_2 (Length: 344)
Name: NF16716_low_2
Description: NF16716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16716_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 48405417 - 48405678
Alignment:
| Q |
23 |
ctttaacatcacatagaagtgtggttttatatttgaagctcgttgttccaagcaa--taaaacaaaacaaagaaccaaacttcatcgcaatacttaagtt |
120 |
Q |
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| T |
48405417 |
ctttaacatcacatagaagtgtggttttatatttgaagctcgttgttccaagcaagctaaaacaaaacaaagaaccaaacttcattgcaatacttaagtt |
48405516 |
T |
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| Q |
121 |
cctatgtgtttacaacacagggtttgtatactttgaatttataaccatctccatcactgtttcggtcaatctccccgatgtgggactctttatgctattt |
220 |
Q |
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| T |
48405517 |
ctaatgtgtttacaacacagggtttgtatactttgaatttataaccatctccatcactgttttggtcaatctccccgatgtgggactctttatgctattt |
48405616 |
T |
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| Q |
221 |
atgttacggattgaattgaaacccatgaattccacaccatcaatcttgttaagctaaaacat |
282 |
Q |
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| T |
48405617 |
atgttacggattgaattgaaacccatgaattccacaccatcaatcttgttaagctaaaacat |
48405678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 48402746 - 48402815
Alignment:
| Q |
149 |
tactttgaatttataaccatctccatcactgtttcggtcaatctccccgatgtgggactctttatgctat |
218 |
Q |
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| T |
48402746 |
tactttcaatttataaccatctcctcctctgtttctgtcaatctccccaatgtaggactctttatgctat |
48402815 |
T |
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