View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_high_1 (Length: 618)
Name: NF16717_high_1
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 35803879 - 35803389
Alignment:
| Q |
14 |
caaaggcataacagtacaactatcacatacaaaagatctgtttcgcgaaaattccccttatttgaccgtgcaaatatgcgggaattcaaaattgaaataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35803879 |
caaaggcataacagtacaactatcacatacaaaagatctgtttcgcgaaaattccccttatttgacagtgcaaatatgcgggaattcaaaattgaaataa |
35803780 |
T |
|
| Q |
114 |
agagaaaaccagcctccaattaaaattttcttcaatatctcaaaatatccaccttttccttttaattctagcaacataacttccaaaacagaagatcaag |
213 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35803779 |
agagaaaaccagcctccaaataaa-ttttcttcaatatctcaaaatatccaccttttccttttaattctagcaacataacttccaaaacagaagatcaag |
35803681 |
T |
|
| Q |
214 |
tgaactatacaaataataactgcaatgaagtacatgataaacttgattgtgatctctaattaatgaggggttcatagtctctacatttaaatacttattt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35803680 |
tgaactatacaaataataactgcaatgaagtacatgataaacttgattgtgatctctaattaatgaggggttcatagtctctacatttaaatacttattt |
35803581 |
T |
|
| Q |
314 |
aattgatatacaccgctaaatgtnnnnnnnnnnnnncatttaactttaatcataacaatttataaagtcacacgaatgattggttgtgaagcgtagacaa |
413 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35803580 |
aattgatatacaccgc-aaatgtaaaaagtcaaaaacatttaactttaatcataaccatttataaagtcacacgtatgattggttgtgaagcgtagacaa |
35803482 |
T |
|
| Q |
414 |
cataaaacttttttacatcaatagggatagaagaacaaaacaaactaacagtaaaataggtcacaaagtaggagcacattaattgatttggat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35803481 |
cataaaacttttttacatcaatagggatagaagaacaaaacaaattaacagtaaaataggtcacaaagtaggagcacattaattgatttggat |
35803389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University