View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_high_11 (Length: 295)
Name: NF16717_high_11
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 30553075 - 30552813
Alignment:
| Q |
18 |
gttagaacactttggtaatgagagtacattctccttaactttttccaaatcgacatttgcataccgcagccaaaaagccggcgatatcatcatcatctcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30553075 |
gttagaacactttggtaatgagagtacattctccttaacttttttcaaatcgacatttgcataccgcagccaaaaagccggtgatatcatcatcatctcc |
30552976 |
T |
|
| Q |
118 |
atggttgctgcattttccaacacgaattttaccaaacaaagatcgtgctcattcgcattaaatcctttaaactgaaatactttgaagcttgacataaagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30552975 |
atggttgctgcattttccaacacgaattgtaccaaacaaagatcgtgctcattcgcattaaatcctttaaactgaaatactttgaagcttgacaaaaagc |
30552876 |
T |
|
| Q |
218 |
agtgaggaaccattgcagaagtaaatacatctttgtctaaatcagctactccctgaaattttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30552875 |
agtgaggaaccattgcagaagtaaatacatctttgtctaaatcagctactccctgaaattttt |
30552813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 30561486 - 30561254
Alignment:
| Q |
48 |
ctccttaactttttccaaatcgacatttgcataccgcagccaaaaagccggcgatatcatcatcatctccatggttgctgcattttccaacacgaatttt |
147 |
Q |
| |
|
||||||||||||||||||||| | || |||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||| |||||| |
|
|
| T |
30561486 |
ctccttaactttttccaaatccatatctgcatatcgcagccaaaaagccagcgatatcatcatcttctccaacattgctgcattttacaacatgaattta |
30561387 |
T |
|
| Q |
148 |
accaaacaaagatcgtgctcattcgcattaaatcctttaaactgaaatactttgaagcttgacataaagcagtgaggaaccattgcagaagtaaatacat |
247 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| || |||| |
|
|
| T |
30561386 |
accaaacaaagatcacactcgatcgcatttaatgctttaaactgaaatactttgaagcttgacagaaagcagtgaggtaatattgcagaagtgaagacat |
30561287 |
T |
|
| Q |
248 |
c-tttgtctaaatcagctactccctgaaatttt |
279 |
Q |
| |
|
| ||| | |||||| ||||||||||||||||| |
|
|
| T |
30561286 |
cttttatgcaaatcatctactccctgaaatttt |
30561254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University