View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_high_13 (Length: 283)
Name: NF16717_high_13
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 830435 - 830189
Alignment:
| Q |
20 |
gcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtc |
119 |
Q |
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| T |
830435 |
gcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtc |
830336 |
T |
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| Q |
120 |
ctcctggttgcgcggttaaatccaatgttctctctttctggcgtcaggtaacttttaaaagttactaactctgtcaatttgtatactatactctgatttt |
219 |
Q |
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| T |
830335 |
cacctggttgcgcggttaaatccaatgttctctctttctggcgtcaggtaacttttaaaagttactaactctgtcaatctgtatactatactctgatttt |
830236 |
T |
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| Q |
220 |
gagtgaatggattatgcatgtgattggttccaacactttgggagtat |
266 |
Q |
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| T |
830235 |
gagtgaatggattatgcatgtgattggttccaacactttgggagtat |
830189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 836438 - 836247
Alignment:
| Q |
18 |
aagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatgg |
117 |
Q |
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| T |
836438 |
aagcattccgtaaatcagttgttaacacacttaaacgccgtttcttttacaactcgtcgtttcaaatttacggcggcgaagccggtttttttgattatgg |
836339 |
T |
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| Q |
118 |
tcctcctggttgcgcggttaaatccaatgttctctctttctggcgtcaggtaacttttaaaagttactaactctgtcaatttgtatactata |
209 |
Q |
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| T |
836338 |
acctcctggctccgctgttaaatacaatgttctctctttttggcgtcaggtaagttttaaaagttactaaacctgtaattttttatactata |
836247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 49235046 - 49234952
Alignment:
| Q |
47 |
cttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtcctcctggttgcgcggttaaatc |
141 |
Q |
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| T |
49235046 |
cttgaacgccgtttgttttatattccttcgtttaagatttatcgcggtgttgctggtttttatgattatggtcctcctggttgtgctgttaaatc |
49234952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 49825799 - 49825694
Alignment:
| Q |
63 |
tttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtcctcctggttgcgcggttaaatccaatgttctctctttctggcg |
162 |
Q |
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| T |
49825799 |
tttatatttcgtagtttaagatttatcgtggtgttgctggtttttatgattatggtcctcctgcttgtgccgttaaatctaatgtcctctccttttggcg |
49825700 |
T |
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| Q |
163 |
tcaggt |
168 |
Q |
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| T |
49825699 |
tcaggt |
49825694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 50861624 - 50861745
Alignment:
| Q |
47 |
cttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtcctcctggttgcgcggttaaatccaatg |
146 |
Q |
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| T |
50861624 |
cttgaacgccgtttgttttatattccgtcgtttaagatttatcgcggtgttgctggttttaatgattatggtcctcctggttgtgccgttaaatctaacg |
50861723 |
T |
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| Q |
147 |
ttctctctttctggcgtcaggt |
168 |
Q |
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| T |
50861724 |
tcctctccttttggcgtcaggt |
50861745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 47934430 - 47934461
Alignment:
| Q |
98 |
gctggtttttatgattatggtcctcctggttg |
129 |
Q |
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| T |
47934430 |
gctggtttttatgattatggtcctcctggttg |
47934461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 941958 - 941835
Alignment:
| Q |
18 |
aagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatgg |
117 |
Q |
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|||||||||||||||| ||| ||||| |||||||| ||| | ||||| ||||| |||||||| ||||| | ||||| |||||||||||||||||||| |
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| T |
941958 |
aagcatttcgtcaatctgttaacaatacgcttgaacgccgtttgttttatattccttcgtttaagatttatcgtggtgttgctggtttttatgattatgg |
941859 |
T |
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| Q |
118 |
tcctcctggttgcgcggttaaatc |
141 |
Q |
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|||||||||||| || |||||||| |
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| T |
941858 |
tcctcctggttgtgccgttaaatc |
941835 |
T |
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