View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_high_17 (Length: 251)
Name: NF16717_high_17
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 51294089 - 51293936
Alignment:
| Q |
18 |
aatggaaatacatccctggttaataagattaatttggtaaagcttttctttaatttcagataaataataataattactcagctaaatgaaacgatcaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51294089 |
aatggaaatacatccctggttaataagattaatttggtaaagcttttctttaatttctgataaataataataattactcagctaaatgaaacgatcaaga |
51293990 |
T |
|
| Q |
118 |
ttccttgaaatggctaataaaaatagttgttgatttatcatggttgtaaaactt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51293989 |
ttccttgaaatggctaataaaaatagttgttgatttatcatggttgtaaaactt |
51293936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 51293890 - 51293812
Alignment:
| Q |
169 |
cttgtattttgactaaacctgctgcggttcttccctttttccttgcaacacta---ctacccacccagctttgcctttg |
244 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
51293890 |
cttgtattttgacttaacctgctgcggttcttccctttttccttgcaacactactactacccacccagctttgcttttg |
51293812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University