View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_high_18 (Length: 245)
Name: NF16717_high_18
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6942630 - 6942862
Alignment:
| Q |
1 |
actgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
6942630 |
actgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaa |
6942729 |
T |
|
| Q |
101 |
ccctgaaccgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnn |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942730 |
ccctgaaccgtacccccagtcgccatcatgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaatttt |
6942829 |
T |
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| Q |
201 |
nnnctttatcatcatctactcatctttcctcca |
233 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6942830 |
tttctttatcatcatctactcatctttcctcca |
6942862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6939455 - 6939687
Alignment:
| Q |
1 |
actgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939455 |
actgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaa |
6939554 |
T |
|
| Q |
101 |
ccctgaaccgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnn |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6939555 |
ccgtgaaccgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctccattcccagtctttaccctctttgaactttgaatttt |
6939654 |
T |
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| Q |
201 |
nnnctttatcatcatctactcatctttcctcca |
233 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
6939655 |
tttctttatcatcatctactcatatttcctcca |
6939687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6788093 - 6787945
Alignment:
| Q |
1 |
actgcagagcagctgcagttcctttttattatgagagaaatagtaatgtttacaatgcacaacgtgtgtataa----aaactattgtccagattacaaca |
96 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||| | ||| |||||||||||||||| ||||||||| | ||||||||||||||||||||| |
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| T |
6788093 |
actgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtataattaaacactattgtccagattacaaca |
6787994 |
T |
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| Q |
97 |
tcaaccctgaaccgtacccccagtcgccatcacgcaacaaactatgata |
145 |
Q |
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||| ||||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
6787993 |
tcacccctgaaccatacccccagtcgccattacacaacaaactatgata |
6787945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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