View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_high_3 (Length: 523)
Name: NF16717_high_3
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 54818352 - 54818652
Alignment:
| Q |
16 |
ctttttatattgcaacaaaatttcttcatttaatatagaaacttgagtgtttgtcaagtagtaagtagctcttagacaannnnnnnn-aataatacagtt |
114 |
Q |
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| T |
54818352 |
ctttttatattgcaacaaaattccttcatttaatatagaaacttgagtgtttgtcaagtagtaagtagctcttagacaatttttttttaataatacagtt |
54818451 |
T |
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| Q |
115 |
gtaggcttgtagctcttaagtcttaatattaaataatgataaaattcttaggtataaaattgatttttaccttattccataattaaaagatggattagta |
214 |
Q |
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| T |
54818452 |
gt--------agctcttaagtcttaatattaaataatgataaaattcttaggtataaaattgatttttacctaattccagaattaaaagatggattagta |
54818543 |
T |
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| Q |
215 |
catggcatctctcaccaacgcatgacactttatagcggttgaattgacagtgattcaccacgctatatatgtggcagtgacccaagtatggtgaaaaaga |
314 |
Q |
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| T |
54818544 |
catggcatctctcaccaacgcatgacactttatagcggttgaattgacagtgattcagcacgctatatatgtggcagtgacccaagtatggtgaaaaaga |
54818643 |
T |
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| Q |
315 |
catttatga |
323 |
Q |
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| T |
54818644 |
catttatga |
54818652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 337 - 482
Target Start/End: Original strand, 54818728 - 54818873
Alignment:
| Q |
337 |
tcttatattactagtttgccgtccaataaatttaaaagttaaggaaaatgaaaatgaatatgatttagaataaattatagaagttgttgagccgcaaaat |
436 |
Q |
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| T |
54818728 |
tcttatattactagtttgccgtccaataaatttaaaagttaaggaaaatgagaatgaataagatttagaataaattatagaagttgttgagccgcaaaat |
54818827 |
T |
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| Q |
437 |
tatttatctatcttaaaagatgaattatagctgcaagattacttga |
482 |
Q |
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| T |
54818828 |
tatttatctatcttaaaagatgaattttagatgcaagattacttga |
54818873 |
T |
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