View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_high_5 (Length: 453)
Name: NF16717_high_5
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 436
Target Start/End: Complemental strand, 43132572 - 43132142
Alignment:
| Q |
5 |
ggtagataatactaagttagtgggtacgttaatttctcaggatttgaacgctagactatattggacaagatgatttagaaccgagtacatattctccgtc |
104 |
Q |
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| T |
43132572 |
ggtaaatattactaagttagtggatacgttaatttctcaggatttgaacgctagactatattggacaagatgatttagaaccgagtacatattctccgtc |
43132473 |
T |
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| Q |
105 |
aagcataagcaaacacattcctaaaacagtataatatcgatgttactataaacgcgatagatactaacttgaattgatgatcatgttactaagcaaaaaa |
204 |
Q |
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| T |
43132472 |
aagcataagcaaacacattcctaaaacagtataatatggatgttactataaacgcgatagatactaacttgaattgatgatcatgttactaagcaaaaaa |
43132373 |
T |
|
| Q |
205 |
ttacctgcaaatccaatatattgtagacataaccagaatcatcaagatctgatggaaactcaggagcatgtgtccattgtccatctacaatgaaacggta |
304 |
Q |
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| T |
43132372 |
ttacctgcaaatccaatatattgtagacataaccagaatcatcaagatctgatggaaactcaggagcatgtgtccattgtccatctacaatgaaacggta |
43132273 |
T |
|
| Q |
305 |
atagtagatacttattggaagtgttttaacaatcacaaaatgttgaccaactcttagcaaggcctccctacaaaacaaaggtnnnnnnnngtcatgatac |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
43132272 |
atagtagatacttattggaagtgttttaacaatcacaaaatgttgacctactcttagcaaggcctccctacaaaacaaagat-aaaaaaagtcatgatac |
43132174 |
T |
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| Q |
405 |
catataatttactatgatgatgatgtaaaaaa |
436 |
Q |
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|| ||||||||||||||||||||||||||||| |
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| T |
43132173 |
caaataatttactatgatgatgatgtaaaaaa |
43132142 |
T |
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