View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_low_12 (Length: 307)
Name: NF16717_low_12
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 3045848 - 3045564
Alignment:
| Q |
19 |
ataaaatctcttgttgcatagta------ataataataacagcaacaacaactaaccagtctcgtggcctcattgttgattatcatcgactggaattggt |
112 |
Q |
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||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3045848 |
ataaaatctcttgttgcatagtagtaataataataataataataacaacaactaaccagtctcgtggcctcgttgttgattatcatcgactggaattggt |
3045749 |
T |
|
| Q |
113 |
agtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaactcttgaactg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3045748 |
agtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcgttcaccctttctttgaactcttgaactg |
3045649 |
T |
|
| Q |
212 |
gaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttcttctt |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3045648 |
gaagtacgattggatgatgatccttcatgcaggtcttgaaatcatctatggcttttataaactcatcatacttttccttcttctt |
3045564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 287
Target Start/End: Original strand, 33468633 - 33468839
Alignment:
| Q |
85 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
184 |
Q |
| |
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||||| || ||||| || |||||||| ||| |||| ||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||||||| |
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| T |
33468633 |
ttgttcatcatcattgattggaattgaaagtgtgatacgataatgcttcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacctta |
33468732 |
T |
|
| Q |
185 |
ttcacccttt-tttgaactcttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcat |
280 |
Q |
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|||| ||||| |||||| | || |||||||||| |||| |||||| ||| | ||| |||||||| ||| ||| |||||||||||||||||| |||| |
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| T |
33468733 |
ttcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttcat |
33468832 |
T |
|
| Q |
281 |
acttttc |
287 |
Q |
| |
|
||||||| |
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|
| T |
33468833 |
acttttc |
33468839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 293
Target Start/End: Complemental strand, 34604149 - 34603960
Alignment:
| Q |
105 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
203 |
Q |
| |
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||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
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| T |
34604149 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34604050 |
T |
|
| Q |
204 |
ttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
293 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||| |||||| ||| |||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
34604049 |
ttgaactggaagtctggtgattcgatgatcattcatca---gggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34603960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 293
Target Start/End: Complemental strand, 34725426 - 34725237
Alignment:
| Q |
105 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
203 |
Q |
| |
|
||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
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| T |
34725426 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34725327 |
T |
|
| Q |
204 |
ttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
293 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||| |||||| ||| |||||||||||||||||||||| ||||||| |||| |||| |
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| T |
34725326 |
ttgaactggaagtctggtgattcgatgatcattcatca---gggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34725237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 88 - 285
Target Start/End: Original strand, 30865192 - 30865393
Alignment:
| Q |
88 |
ttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttc |
187 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| ||| || ||||| ||||| || ||| |
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| T |
30865192 |
ttgatgatcatcgactgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattc |
30865291 |
T |
|
| Q |
188 |
acccttt-tttgaactcttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatact |
283 |
Q |
| |
|
||| ||| || ||| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
30865292 |
accttttgttagaattcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgtctttcataaacccatcatact |
30865391 |
T |
|
| Q |
284 |
tt |
285 |
Q |
| |
|
|| |
|
|
| T |
30865392 |
tt |
30865393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 103 - 281
Target Start/End: Original strand, 38868786 - 38868965
Alignment:
| Q |
103 |
tggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaac |
201 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| ||| |||||| |
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| T |
38868786 |
tggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaatacatatgccctttaaggacctcattcaccatttgtttgaat |
38868885 |
T |
|
| Q |
202 |
tcttgaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
281 |
Q |
| |
|
||||||||||||||| || | ||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||| |
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|
| T |
38868886 |
tcttgaactggaagtctgactcgatgatgatcattcatgcatctcttgaaatcatctatgtcttttacaaacttatcata |
38868965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 39046822 - 39046734
Alignment:
| Q |
94 |
atcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacct |
182 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||| ||||||||| |||||||| |
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|
| T |
39046822 |
atcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatattaaatgattatgccctagaagtacct |
39046734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 1206334 - 1206524
Alignment:
| Q |
85 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
184 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||| || || ||||||||||||| |||||||| ||||| |||||||| |||||||||||| |
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|
| T |
1206334 |
ttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcc------taaatgtttatgcc-tttaagtacctca |
1206426 |
T |
|
| Q |
185 |
ttcacccttt-tttgaactcttgaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
281 |
Q |
| |
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||| |||||| |||||| ||||||||| ||| || ||| |||| || |||||||||||||||||||||| ||||||||| | ||| |||||||| |
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|
| T |
1206427 |
ttcgccctttgtttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtctttcacaaattcatcata |
1206524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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