View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_low_16 (Length: 278)
Name: NF16717_low_16
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 6943408 - 6943234
Alignment:
| Q |
60 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctttacatgaatgcccgtaaatatcaagaggtaagtttcaatcatttatcc |
159 |
Q |
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| T |
6943408 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctcttcatgaatgcctgtaattatcatgaggtaagtttcaatcattaatct |
6943309 |
T |
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| Q |
160 |
cttggagacttggctaattgctgcacagttttt--------acatggatctttgtatggttgtaacttaatgcat |
226 |
Q |
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| T |
6943308 |
cttggagacttagctaattgctgcacagtttttaaaaattgatatggatctttgtatggttgaaacttaatgcat |
6943234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 6787358 - 6787458
Alignment:
| Q |
18 |
tgcaagagcttgtcttgacttaacagccaagttttcaaaatcagcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctttacatg |
117 |
Q |
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| T |
6787358 |
tgcaagagcatgtcctgtcttaacaaccaagttttcaaaatcagcttgttttgtttgctaacctcccggacgtttatggaatatccaattccttttcatg |
6787457 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
6787458 |
a |
6787458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 6940212 - 6940139
Alignment:
| Q |
60 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctttacatgaatgcccgtaaatatc |
133 |
Q |
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| T |
6940212 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
6940139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 6787457 - 6787588
Alignment:
| Q |
136 |
gaggtaagtttcaatcatttatcccttggagacttggctaattgctgcacagtttttaca--------tggatctttgtatggttgtaacttaatgcatt |
227 |
Q |
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| T |
6787457 |
gaggtaagtttcaagcatttactcttgggagacttagctaatggctgcacagttttaaaaaattcatatggatctttgtatgggtgaaactcaatgcatt |
6787556 |
T |
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| Q |
228 |
gaatatatattttgattggactacatctttat |
259 |
Q |
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| T |
6787557 |
taatgtatattttgattggactatacctttat |
6787588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 6940143 - 6940106
Alignment:
| Q |
154 |
ttatcccttggagacttggctaattgctgcacagtttt |
191 |
Q |
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| T |
6940143 |
ttatctcttggagacttagctaattgctgcacagtttt |
6940106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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