View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_low_18 (Length: 254)
Name: NF16717_low_18
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_18 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 33138208 - 33138299
Alignment:
| Q |
13 |
gataattctttatattgatagcaaacaatataatcatataactgagaagttcatcatataatcagttaggcttgaaataatttagttatcca |
104 |
Q |
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| T |
33138208 |
gataattctttatattgatagcaaataatataatcatataactgagaagttcatcatataatcagttaggcttgaaataatttagttatcca |
33138299 |
T |
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Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 33138362 - 33138449
Alignment:
| Q |
167 |
acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatac |
254 |
Q |
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| T |
33138362 |
acaggtttcctgaagttgctaagctttctcttttgtactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatac |
33138449 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 34309818 - 34309735
Alignment:
| Q |
171 |
gtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatac |
254 |
Q |
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| T |
34309818 |
gtttcctgaagttgctaagctttgtcttgtgtactcgcttgaaattcgtgggatgattaacactctttccttgtccccaaatac |
34309735 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 23332211 - 23332124
Alignment:
| Q |
167 |
acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatac |
254 |
Q |
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| T |
23332211 |
acaggttccctgaagttgctaagcttcgtcttttgttctcgcatgaaatttgtgggattattaacactctttcattgtccccaaatac |
23332124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 19246719 - 19246806
Alignment:
| Q |
167 |
acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatac |
254 |
Q |
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| T |
19246719 |
acaggttcccggaagttgctaagctcagtcttgtgttctcgcatgaaattcgtggtattattaagactctttccttgtccccaaatac |
19246806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 899427 - 899514
Alignment:
| Q |
167 |
acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatac |
254 |
Q |
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| T |
899427 |
acaggtttcctgaagtcgttaagctttgtcttgtgttctcgcttgaaattcgtggaataattaacactttttccttgtcccaaaatac |
899514 |
T |
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