View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_low_2 (Length: 578)
Name: NF16717_low_2
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 254 - 523
Target Start/End: Complemental strand, 41172668 - 41172399
Alignment:
| Q |
254 |
attataggtttcaacgtaacaatgattctcaactatccaccagaagactacatttatgctttagacaggatgcagaagataagcacgcttatggccatgg |
353 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172668 |
attataggtttcaacgtaacaatggttctcaactatccaccagaagactacatttatgctttagacaggatgcagaagataagcacgcttatggccatgg |
41172569 |
T |
|
| Q |
354 |
gtccaacgacttacctattcaccctttttctaaacacacatgctttctctcccattgtcatcttctcaatattatcctccatttgtttgtttttcgccgc |
453 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172568 |
gtccaacgacttacctattcacccttcttctaaacacacatgctttctctcccattgtcatcttctcaatattatcctccatttgtttgtttttcgccgc |
41172469 |
T |
|
| Q |
454 |
catacttgccttcacccttaagaagaatgtcctgcttttccaaaaccaggtcgactccaccacccgcttc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172468 |
catacttgccttcacccttaagaagaatgtcctgcttttccaaaaccaggtcgactccaccacccgcttc |
41172399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 41172902 - 41172747
Alignment:
| Q |
20 |
agccatggtattcttctcattcttttgatcaagaaatatcaacctttagaaaccctaataatgcaaaaatatcaaccacgtcaagaagtcttctcttgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172902 |
agccatggtattcttctcattcttttgatcaagaaatatcaacctttagaaaccctaataatgcaaaaatatcaaccacgtcaagaagtcttctcttgat |
41172803 |
T |
|
| Q |
120 |
caagaaaaccacaagaattgtcttctttttctcaggtctacagaaaaggtgctacc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172802 |
caagaaaaccacaagaattgtcttctttttctcaggtctacagaaaaggtgctacc |
41172747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 520 - 567
Target Start/End: Complemental strand, 41172357 - 41172310
Alignment:
| Q |
520 |
cttcttcttctttgcgaattatcatttcattcccttcttcttgcttca |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41172357 |
cttcttcttctttgcgaattatcatttcattcccttcttcttgcttca |
41172310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University