View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_low_21 (Length: 243)
Name: NF16717_low_21
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 38255747 - 38255964
Alignment:
| Q |
14 |
caaaggtataactttctatatttgtgaatctttctctagtgtgtgcctatttctattggcttaattaatcaatatagtatattttatattatgatgatag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38255747 |
caaaggtataactttctatatttgtgaatctttctctagtgtgtgcctatttctattggcttaattaatcaatatagtatattttatattatgatgatag |
38255846 |
T |
|
| Q |
114 |
gttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcatagca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38255847 |
gttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcatagca |
38255946 |
T |
|
| Q |
214 |
gatatcaatgatgaattg |
231 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38255947 |
gatatcaatgatgaattg |
38255964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 45152019 - 45152140
Alignment:
| Q |
110 |
ataggttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcat |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| |||||||| || || |||| |||| ||| ||||||||||||||||||||||| || |
|
|
| T |
45152019 |
ataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagttat |
45152118 |
T |
|
| Q |
210 |
agcagatatcaatgatgaattg |
231 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45152119 |
agcagatatcaatgatgaattg |
45152140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 45141376 - 45141497
Alignment:
| Q |
110 |
ataggttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcat |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| |||||||| || || ||| |||| ||| ||||||||||||||||||||||| || |
|
|
| T |
45141376 |
ataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagcgaagacattcgtggaaaatggagcatttgtagttat |
45141475 |
T |
|
| Q |
210 |
agcagatatcaatgatgaattg |
231 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45141476 |
agcagatatcaatgatgaattg |
45141497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University