View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_low_4 (Length: 509)
Name: NF16717_low_4
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 7326409 - 7325923
Alignment:
| Q |
19 |
catgccaatttgatttgttcaaaatcgaccacattattggtaactcaggct-----atcctggtggaattatcgcgtcgttgtctcaaaatccttatcac |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7326409 |
catgccaatttgatttgttcaaaatcaaccacattattggtaactcaggcttatcaatcctgctggaattatcgcgtcgttgtctcaaaatccttatcac |
7326310 |
T |
|
| Q |
114 |
gatctagcgaactaaccgtggttc-gacttaacagtagaacaannnnnnnnaccataaaagacattacgtatggtgttcacatattgagaaggccccaca |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7326309 |
gatctagcgaactaaccgtggttccgacctaacagtagaacaattttttt-accataaaagacattacgtatggtgttcacatattgagaaggccccaca |
7326211 |
T |
|
| Q |
213 |
aatgcaacatacttaaatctttttaagaaaatttttgtcattcattatagttatgtccaacttaagaattaattttgcggttagtgttcataatatccga |
312 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7326210 |
aatgcaacatacttaaatatttttaagaaaagttttgtcattcattatagttatgtccaacttaagaattaattttgtggttagtgttcataatatccga |
7326111 |
T |
|
| Q |
313 |
tttttnnnnnnnnngttagtgttcataatacnnnnnnnnngggtacaatcataacactttttgtataatagctaatacaccaatgtaattttcccttaaa |
412 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7326110 |
tttaaaaaaaaaaagttattgttcataatacttttattttgggtacaatcataacactttttgtataatagctaatacaccaatgtaattttcccttaaa |
7326011 |
T |
|
| Q |
413 |
agaaaaataattaagaagtacaccaatgtaattttaatccattattatccaactagaaacaaaacccacc-ttatccttgaacctttg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7326010 |
agaaaaataattaagaagtacaccaatgtaattttaatccattattatccaactagaaacaaaacccacctttatccttgaacctttg |
7325923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University