View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16717_low_6 (Length: 375)
Name: NF16717_low_6
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 40410395 - 40410031
Alignment:
| Q |
10 |
ttaattaatggtctttcttttaaggaatgtatttcatatttcttacactat--tgacaaaagatccttacaactcttggtcatatctatgcaactcattc |
107 |
Q |
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| T |
40410395 |
ttaattaatggtcttctttttaaggaatgtatttcatatttcttacactatattgacaaaagatccttacaattctaggtcatatctatgcaactcattc |
40410296 |
T |
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| Q |
108 |
atattttgcttcaatgataaaagttcaaaaactcatctcatcttctaattacaaagggttgaagagctcgtccaattatgcgtttgatttaaatggaaag |
207 |
Q |
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| T |
40410295 |
atattttgcttcaatgataaaagttcaaaaactcatctcatcttctaattacaaagggttgaagagctcgtccaattatgcgtttgatttaaatggaaag |
40410196 |
T |
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| Q |
208 |
tataaaccaaaaattgttttaa------------ataagaaaagacaaattagcaaatttaatttcctcaatctaaattttcaccaccaatttaacttct |
295 |
Q |
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||||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40410195 |
tataaaccaaaaattgtatgcaaaaaccgcactgataagaaaacacaaattagcaaatttaatttcctcaatctaaattttcaccaccaacttaacttct |
40410096 |
T |
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| Q |
296 |
ggttgcgggtacacacaatattgtacgtactagtcagtatcactctattaatttgcggacttaat |
360 |
Q |
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| T |
40410095 |
ggttgcgggtacacacaatattgtacgtactagtcagtatcactctattaatttgcggacttaat |
40410031 |
T |
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