View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16717_low_7 (Length: 366)

Name: NF16717_low_7
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16717_low_7
NF16717_low_7
[»] chr4 (6 HSPs)
chr4 (40-357)||(47293344-47293642)
chr4 (70-289)||(56208520-56208739)
chr4 (62-249)||(55705858-55706045)
chr4 (82-226)||(45876737-45876881)
chr4 (93-226)||(45858817-45858950)
chr4 (73-244)||(54304200-54304377)
[»] chr8 (2 HSPs)
chr8 (63-276)||(7972058-7972271)
chr8 (69-273)||(7961694-7961898)
[»] chr5 (3 HSPs)
chr5 (82-226)||(35854542-35854686)
chr5 (62-224)||(10521303-10521465)
chr5 (150-226)||(35802504-35802580)
[»] chr2 (1 HSPs)
chr2 (93-224)||(24357457-24357588)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 40 - 357
Target Start/End: Complemental strand, 47293642 - 47293344
Alignment:
Q  40 tcaggaagattcggactagggattgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 139  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293642 tcaggaagattcggactagggattgagcgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 47293543  T
Q  140 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293542 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttactggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatct 47293443  T
Q  240 ggaaagagcctcattatctcgaaatcgtatatacatatgacgtgctctctcggcaaatgcctctgtatcagcggtgtggtacttgtaacttgtaagtacc 339  Q
    |||||||||| |||             |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  47293442 ggaaagagccgcat------------atatatacatatgacgtgctctctcggcaaatgcctctgtatcagcggtgtggt-------acttgtaagtacc 47293362  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 289
Target Start/End: Original strand, 56208520 - 56208739
Alignment:
Q  70 tccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgag 169  Q
    ||||||| ||| || ||| ||| ||||||||||   |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||    
T  56208520 tccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagag 56208619  T
Q  170 atactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtat 269  Q
    ||| ||| || ||||||||| ||| ||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||| || |    
T  56208620 atagtgcatctttaccggtctaaaccctcccctgtgcaacctcttccatctcatctatagtcattgatctggaaagagccgcattatctcgaaattgttt 56208719  T
Q  270 atacatatgacgtgctctct 289  Q
    ||| |||||  |||||||||    
T  56208720 ataaatatgttgtgctctct 56208739  T

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Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 62 - 249
Target Start/End: Complemental strand, 55706045 - 55705858
Alignment:
Q  62 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 161  Q
    ||||| ||||||||| | | |||| |||||||||||||||||| || ||||||||||  ||||||||||| |||||||  ||||||||||||||||||||    
T  55706045 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 55705946  T
Q  162 accatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcc 249  Q
    |||||||||| ||||||| ||||||||||||| ||| || || ||||||||||||||||||||||| ||||| |||||||||||||||    
T  55705945 accatgagatgctgcgtctttaccggtccaaaccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaagagcc 55705858  T

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Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 45876737 - 45876881
Alignment:
Q  82 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 181  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |||| ||||    
T  45876737 acctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatcct 45876836  T
Q  182 taccggtccaaatccttccctgtgcaacctcttccatcttgtcta 226  Q
    |||||||||||| ||| || |||||||||||||||||||||||||    
T  45876837 taccggtccaaaccctcccttgtgcaacctcttccatcttgtcta 45876881  T

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Target: chr4; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 45858817 - 45858950
Alignment:
Q  93 ttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaa 192  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  193 atccttccctgtgcaacctcttccatcttgtcta 226  Q
    | |||  |||||||| ||||||||||||||||||    
T  45858917 accctctcctgtgcagcctcttccatcttgtcta 45858950  T

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Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 54304377 - 54304200
Alignment:
Q  73 acaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagata 172  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||| || || |  || ||||||||||||||||||||  |||||     
T  54304377 acaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatg 54304278  T
Q  173 ctgcgtccttaccggtccaaa------tccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa 244  Q
     |||||||||||| |||||||       ||| ||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  54304277 ttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 54304200  T

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Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 63 - 276
Target Start/End: Original strand, 7972058 - 7972271
Alignment:
Q  63 tgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaa 162  Q
    |||| ||||||||| ||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||    
T  7972058 tgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaa 7972157  T
Q  163 ccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaa 262  Q
    |||| ||||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||    
T  7972158 ccattagatactgcatctttaccggtccaaatcctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaagatccacatcatctcgaa 7972257  T
Q  263 atcgtatatacata 276  Q
    || || ||||||||    
T  7972258 attgtttatacata 7972271  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 69 - 273
Target Start/End: Original strand, 7961694 - 7961898
Alignment:
Q  69 ctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatga 168  Q
    |||||||| ||| || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||| |    
T  7961694 ctccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcatta 7961793  T
Q  169 gatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgta 268  Q
    |||| ||| || ||||| |||||||| || || |||||||||||||||||||||||||| |||||| |||| ||||||||| ||| |||||||||| ||     
T  7961794 gatattgcatctttaccagtccaaattctcccttgtgcaacctcttccatcttgtctatagtcattaatcttgaaagagccgcatcatctcgaaattgtt 7961893  T
Q  269 tatac 273  Q
    |||||    
T  7961894 tatac 7961898  T

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Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 35854686 - 35854542
Alignment:
Q  82 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||||    
T  35854686 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcct 35854587  T
Q  182 taccggtccaaatccttccctgtgcaacctcttccatcttgtcta 226  Q
    |||||||||||||||| || |||||||||| || |||||||||||    
T  35854586 taccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 10521465 - 10521303
Alignment:
Q  62 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 161  Q
    ||||| |||| |||||| | |||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  10521465 ttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaa 10521366  T
Q  162 accatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtc 224  Q
    ||| |||||| |||||||||| ||| |||||||||| |  |||| || ||||| |||||||||    
T  10521365 accttgagatgctgcgtccttcccgatccaaatcctcctatgtggaatctctttcatcttgtc 10521303  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  150 agcatcaaccaaaccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtcta 226  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| || |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 24357588 - 24357457
Alignment:
Q  93 ttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaa 192  Q
    |||||||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||||||||| ||| |||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  193 atccttccctgtgcaacctcttccatcttgtc 224  Q
    |  || |||||||| ||||  |||||||||||    
T  24357488 actctcccctgtgctaccttctccatcttgtc 24357457  T

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