View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16717_low_9 (Length: 327)
Name: NF16717_low_9
Description: NF16717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16717_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 5185321 - 5185012
Alignment:
| Q |
1 |
gctgctcaaaaataaatcacaacaccttttattaacacaaatgtcttttatgaataaaatcggttttataagagagatttggatcaacaaagttgatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
5185321 |
gctgctcaaaaataaatcacaacaccttttattaacacaaatgtctattatgaataaaatcagttttataagagacatttgaatcaataaagttgatata |
5185222 |
T |
|
| Q |
101 |
tctagaccaaattttaaactaaatgcatcggtctttgttgagcaaaacgtcttttataaataagactgaagggagtatattatgacttgcctgacgaaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5185221 |
tttagaccaaattttaaactaaatgcatcggtctttgttgaggaaaacgtcttttataaataagattgaagggagtatattatgacttgcctgacgaaga |
5185122 |
T |
|
| Q |
201 |
tggccattggtattggtagccacgtcttcctccaatgaacgtttatatcgattgtgataagcacgtctcaaaatgaaaagttcatcaggtgaagagacac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5185121 |
tggccattggtattggtagccacgtcttcctccaaggaacgtttatatcgattgtgataagcacgtctcaaattgaaaagttcatcaggtgaagagacac |
5185022 |
T |
|
| Q |
301 |
atgaaatttc |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
5185021 |
atgaaatttc |
5185012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5237716 - 5237421
Alignment:
| Q |
1 |
gctgctcaaaaataaatcacaacaccttttattaacacaaatgtcttttatgaataaaatcggttttataagagagatttggatcaacaaagttgatata |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | | |||||| |||||||| | ||||| |
|
|
| T |
5237716 |
gctgctcaaaaattaatcacaacaccttttattaacacaaatgtctcttatggataaaatcggttttatacaaaatatttgggtcaacaaaagttatata |
5237617 |
T |
|
| Q |
101 |
tctagaccaaattttaaactaaatgcatcggtctttgttgagcaaaacgtcttttataaataaga-ctgaagg-gagtatattatgacttgcctgacgaa |
198 |
Q |
| |
|
||||||||||||||| || || || |||| | |||||||| |||||||||||||||||||||| | ||||| | ||||||||||||||||||||||| |
|
|
| T |
5237616 |
tctagaccaaattttgaattagatacatcaatttttgttgaaaaaaacgtcttttataaataagatcagaaggagtatatattatgacttgcctgacgaa |
5237517 |
T |
|
| Q |
199 |
gatggccattggtattggtagccacgtcttcctccaatgaacgtttatatcgattgtgataagcacgtctcaaaatgaaaagttcatcaggtgaag |
294 |
Q |
| |
|
||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5237516 |
gataaccattgttattggtagcaacgtcttcctccaaggaacgtttatatcgattgtgataagcacgtctcaaattgaaaagttcatcaggtgaag |
5237421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University