View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16718_high_2 (Length: 456)
Name: NF16718_high_2
Description: NF16718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16718_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 50453395 - 50452973
Alignment:
| Q |
18 |
aagaagcctacaattgtgaagaagggtagacaagcaaagaagatgaaagtggagacagaatcacataacatcaaagatatgtttaccagggcatcccgaa |
117 |
Q |
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| T |
50453395 |
aagaagcctacaattgtgaagaagggtagacaagcaaagaagatgaaagtggagacagaatcacataacatcaaagatatgtttaccagggcatcccgaa |
50453296 |
T |
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| Q |
118 |
ggagaaactaaaccattccattgaaattggtgaaaaattgaaaatggtcattgtcgtgtagtatcattttctagacacacgagttgtggataagcaccga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50453295 |
ggagaaactaaaccattccattgaaattggtgaaaaattgaaaatggtcattgtcgtgtagtatcattttctagacacaagagttgtggataagcaccga |
50453196 |
T |
|
| Q |
218 |
gtcatatcctggtttgtaccgtccattttatgcta--nnnnnnncctgggtctatgttatgctatttaatttaattcgagattttatcatcaacaattcc |
315 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50453195 |
gtcatatcctggtttgtaccgttcattttatgctattttttttttctgggtctatgttatgctatttaatttaattcgagattttatcatcaacaattcc |
50453096 |
T |
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| Q |
316 |
tatttgcagcagcatatgttatctacctaccattaaataagccctcgtctcgtggcatatctcaaattcgagtcaaagaatgcctccttccattcgtttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50453095 |
tatttgcagcagcatatgttatctacctaccattaaataagccctcgtctcgtggcatatctcaaattcgagtcaaagaatgcctccttccattcgtttt |
50452996 |
T |
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| Q |
416 |
acattgattgaaaaacaggtgac |
438 |
Q |
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| T |
50452995 |
acattgattgaaaaacaggtgac |
50452973 |
T |
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