View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16718_high_3 (Length: 397)

Name: NF16718_high_3
Description: NF16718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16718_high_3
NF16718_high_3
[»] chr7 (1 HSPs)
chr7 (47-383)||(37289564-37289897)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 47 - 383
Target Start/End: Complemental strand, 37289897 - 37289564
Alignment:
Q  47 catcttattcttgaacgcgttaaatgatgtcctaaataaaattgcatgatgcatacaattttatgaagattgaactgaattttaagctagagaannnnnn 146  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          
T  37289897 catcttattcttgaacgcgttaaatgatgtactaaataaaattgcatgatgcatacaattttatgaagattgaactcaattttaagctagagaatttttt 37289798  T
Q  147 naatccagtccattttgatatgagaatcaacataactttcttcaacgtaattcactcgttgtgcatatagaaagccaactagtgccaagagccaatccag 246  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||| |||||||||    
T  37289797 taatccattccattttgatatgagaatcaacataactttcttcaacgtaattcactcgttgtgcatatagaaa----------gccaagaaccaatccag 37289708  T
Q  247 ttttatatgccataacagaattttgtaaaatggaatcgatatattcaattatgtcaggaacatatactattctg---------tatatactaatctgttt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  37289707 ttttatatgccataacagaattttgtaaaatggaatcgatatattcaattatgtcaggaacatatactattctgtatatactatatatactaatctgttt 37289608  T
Q  338 gtgaatgtgcaaacgcacgcctacgatgtcatatggtgatctaatt 383  Q
    ||| |||||||||||||||||||| |||||  ||||||||||||||    
T  37289607 gtggatgtgcaaacgcacgcctacaatgtc--atggtgatctaatt 37289564  T

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