View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16718_low_1 (Length: 584)
Name: NF16718_low_1
Description: NF16718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16718_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Original strand, 23379302 - 23379853
Alignment:
| Q |
20 |
tctactagtagctaattagacatgctttgttttaaataatttttcttgccaaaagtgacaattcattttcaattcactggtgttgtagatcttattgctt |
119 |
Q |
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| T |
23379302 |
tctactagtagctaattagacatgctctgttttaaataatttttcttgccaaaagtgacaattcattttcaattcaccggtgttgtagatcttattgctt |
23379401 |
T |
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| Q |
120 |
attgttgatccattgcaatatgttgattgctatttggtttagttgagggagcctccttcatggttactgtgagttgtatttggtaaacaaattttagctt |
219 |
Q |
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| T |
23379402 |
attgttaatccattgcaatatgttgattgctatttggtttagttgagggagcctccttcatggttactgtgagttgtatttgctaaacaaattttagctt |
23379501 |
T |
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| Q |
220 |
cgtgctttatagtc-attggtcattgagtttgaatttccatcannnnnnn-gctgccactaaaagtctgtgccaataacataatagtcattatggtgatg |
317 |
Q |
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| T |
23379502 |
cgtgctttatagtccattggtcattgagtttgaattttcatcatattttttgctgccactaaaagtttgtgccaataacataatagtcattattgtgatg |
23379601 |
T |
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| Q |
318 |
atgctcgtgtgtaccttcttagtacgagccttgaagcatttgagttttagcttggaaggaacaaatgatgtttatgtataagctatatgttcttagcacg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23379602 |
atgctcgtgtgtaccttcttagtacgagccttgaagcatttgagttttagcttggaaggaacaaatgatgtttatgtataagctatatgttctcagcacg |
23379701 |
T |
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| Q |
418 |
acactagcactttgtgcatcaattgtttggtgatatatttctttgttgatatattagcttgacttttatttgtgatggtcaagcaatgatattttgcttc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23379702 |
acactagcactttgtgcatcaattgtttggtgatatatttctttgttgatatattagcttgacttttatttgtgatagtcaagcaatgatattttgcttc |
23379801 |
T |
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| Q |
518 |
caccttgagtggtttaccttatgacttttcgaatgttagcttctatcctatg |
569 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
23379802 |
caccttgagtgatttaccttatgacttttcgaatgttcgcttctatcctatg |
23379853 |
T |
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