View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16718_low_10 (Length: 213)
Name: NF16718_low_10
Description: NF16718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16718_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 18947477 - 18947663
Alignment:
| Q |
9 |
atcatcatcttcttcctccattgttctgtttctctttgttctatttttctcattatcactgcttatgtctctaactcttctttttgatgggtcataaaaa |
108 |
Q |
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| T |
18947477 |
atcatcatcttcttcctccattgttctgtttctctttgttctatttttctcattatcactgcttatgtctctaactcttctttttgatgggtcataaaaa |
18947576 |
T |
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| Q |
109 |
ttaagtatgattccaagtctggaatcaacaacacaaccaccgtcttaaactctctattctcttcaagccaccgtcaccaatttcatc |
195 |
Q |
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| T |
18947577 |
ttaagtatgattccaagtctggaatcaacaacacaaccaccgtcttaaactctctattctcttcaagccaccgtcaccaatttcatc |
18947663 |
T |
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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 6204782 - 6204902
Alignment:
| Q |
30 |
tgttctgtttctctttgttctatttttctcattatca----ctgcttatgtctctaactcttctttttgatgggtcataaaaattaagtatgattccaag |
125 |
Q |
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| T |
6204782 |
tgttatgtttctctttgttccatttctctaattatcaatcactgccgatgtctctttctcttctttttgatggatcatccaaaataagtatgattccaag |
6204881 |
T |
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| Q |
126 |
tctggaatcaacaacacaacc |
146 |
Q |
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| T |
6204882 |
tctggaatcaacagcacaacc |
6204902 |
T |
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