View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16718_low_6 (Length: 271)
Name: NF16718_low_6
Description: NF16718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16718_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 33376786 - 33377053
Alignment:
| Q |
4 |
tcaccttttcaaaattgaaggcactatatcctttacaaccaacaatgatgcttcatattataatcatcatcatagttttggttacttaaccttcaagctt |
103 |
Q |
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| T |
33376786 |
tcaccttttcaaaattgaaggcactatatcctttacaaccaacaatgatgcttcatattataatcatcatcatcatatgggttacttaaccttcaagctt |
33376885 |
T |
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| Q |
104 |
gatggtttttggtctcaatcttcagggaatgtttgcatggttggaaaaagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgttttta |
203 |
Q |
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| T |
33376886 |
gatggtttttggtctcaatcttcagggaatgtttgcatggttggaaaaagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgttttta |
33376985 |
T |
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| Q |
204 |
aacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagt |
271 |
Q |
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| T |
33376986 |
aacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagt |
33377053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 271
Target Start/End: Original strand, 33383019 - 33383200
Alignment:
| Q |
90 |
taaccttcaagcttgatggtttttggtctcaatcttcagggaatgtttgcatggttggaaaaagcaaaggtgtttcgaaaaaaggtgattctctcaatct |
189 |
Q |
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|||| ||||||||||| || |||||||| |||||||||| || ||||| |||||||||| | | | ||| ||| ||| |||||||||||| ||||| |
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| T |
33383019 |
taactttcaagcttgaagggttttggtcaaaatcttcaggaaaagtttgtatggttggaacaggaattggttattcacaaacaggtgattctcttaatct |
33383118 |
T |
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| Q |
190 |
tgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagt |
271 |
Q |
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| T |
33383119 |
tgatgctgtctttaagcttaacaatgttttccattcaagtaacatcactagtttgatcagtggaagcttagagagtttgagt |
33383200 |
T |
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