View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16718_low_9 (Length: 213)
Name: NF16718_low_9
Description: NF16718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16718_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34691557 - 34691698
Alignment:
| Q |
1 |
acaagtaaaataaatctccgtattcattcaacaataaagtaagatactatatagaaaccacacattctgacaagtcaaaaatatgcaaatcaacgacaaa |
100 |
Q |
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| T |
34691557 |
acaagtaaaataaatctccatattcattcaacaataaagtaaaatactatatagaaacaacacattctgacaagtcaaaaatatgcaaatcaacgacaaa |
34691656 |
T |
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| Q |
101 |
aatacaacataaattgggtatgtaattgaatgtttgagcagg |
142 |
Q |
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| T |
34691657 |
aatacaacttaaatcgggtatgtaattgaatgtttgagcagg |
34691698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34713969 - 34714110
Alignment:
| Q |
1 |
acaagtaaaataaatctccgtattcattcaacaataaagtaagatactatatagaaaccacacattctgacaagtcaaaaatatgcaaatcaacgacaaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34713969 |
acaagtaaaataaatctccatattcattcaacaataaagtaaaatactatatagaaacaacacattctgacaagtcaaaaatatgcaaatcaacgacaaa |
34714068 |
T |
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| Q |
101 |
aatacaacataaattgggtatgtaattgaatgtttgagcagg |
142 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
34714069 |
aatacaacttaaatcgggtatgtaattgaatgtttgagcagg |
34714110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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