View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_high_11 (Length: 356)
Name: NF16719_high_11
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 44891669 - 44891324
Alignment:
| Q |
10 |
ataattctaacagacacaaca---gtggcactcaatgaatggtgaacagaataaagggctaagatttaagaattacttcatattactttatattaagaaa |
106 |
Q |
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| T |
44891669 |
ataattctaacagacacaacaacagtggcactcaatgaatggtgaacagaataaagggctaagatttaagaattacttcacattactttatattaagaaa |
44891570 |
T |
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| Q |
107 |
tgatattttttaaattcaatgtgtcaaattaccacatatttcacaagtaaag-aaatatgtggtctagaagaattgcaattcatgcctcaagtc-nnnnn |
204 |
Q |
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| T |
44891569 |
tgatattttttaaattcaatgtgtcaaattaccacatatttcacaagtaaagaaaatatgtggtctagaagaattgcaattcatgcctcaagtcaaaaaa |
44891470 |
T |
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| Q |
205 |
nnccttcgctttttccagtgtcattaaacacaacaaacttgcggcaaaatttgtggctggcctcaaagttgtatgattccaattttgatattacagagtc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44891469 |
atccttcgctttttccagtgtcattaaacacaacaaacttgcggcaaaatttgtggctggcctcaaagttgtatgattccaattttgatattacagagtc |
44891370 |
T |
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| Q |
305 |
cacgggggaagaaatgttaaaaagattcacagaaatgaatattctg |
350 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44891369 |
cacgggggaagaaatgtcaaaaagattcacagaaatgaatattctg |
44891324 |
T |
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