View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_high_5 (Length: 425)
Name: NF16719_high_5
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 5 - 408
Target Start/End: Complemental strand, 30864589 - 30864186
Alignment:
| Q |
5 |
gctgctgcagttgatattattgcagcagcggtgacagtgggcctcttccgtttctttttctcataaggaactcctctagctttggcctgaccatctttaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30864589 |
gctgctgcagttgatattattgcagcagcggtgacagtgggcctcttccttttctttttctcataaggaactcctctagctttggcctgaccatctttaa |
30864490 |
T |
|
| Q |
105 |
cttcccttagataaatcctaaccgcccgagttccaaacggattactctccggtttccctccattttcctcgaaagcagccctaagacgtccgatgagagc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30864489 |
cttcccttagataaatcctaaccgcccgagttccaaacggattactctccggtttccctccattttcctcgaaagcagccctaagacgtccgatgagagc |
30864390 |
T |
|
| Q |
205 |
gtcaagacttccccacgcttgcttaagaggacaagcgcaaggagaaggagggttaggttgtccgaaatactgacaacctatcatgtgcaccttagttttt |
304 |
Q |
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| T |
30864389 |
gtcaagacttccccacgcttgcttaagaggacaagcgcaaggagaaggtgggttaggttgtccgaaatacggacaacctatcacgtgcaccttagttttt |
30864290 |
T |
|
| Q |
305 |
ccaaattgatcaagatacttgagaaactctatcacatgtgctccactgcatagtgctagggttaatggtggtttgtggttacgtagatattgttggaacg |
404 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30864289 |
ccaaattgatcaagatacttgagaaactcaatcacatgtgctccactgcatagtgctagggttaatggtggtttgtggttacgtagatattgttggaacg |
30864190 |
T |
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| Q |
405 |
tgtt |
408 |
Q |
| |
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|||| |
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| T |
30864189 |
tgtt |
30864186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 35814724 - 35814648
Alignment:
| Q |
191 |
cgtccgatgagagcgtcaagacttccccacgcttgcttaagaggacaagcgcaaggagaaggagggttaggttgtcc |
267 |
Q |
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||||||||||| || |||||||||||||| |||||||| ||||||||||| ||||| | ||| ||| |||||||||| |
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| T |
35814724 |
cgtccgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtcc |
35814648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 397
Target Start/End: Complemental strand, 26585140 - 26585039
Alignment:
| Q |
296 |
ttagtttttccaaattgatcaagatacttgagaaactctatcacatgtgctccactgcatagtgctagggttaatggtggtttgtggttacgtagatatt |
395 |
Q |
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||||| || ||||||||||||||||| || | |||||| ||||| ||||||||||||||| || | || || |||||||| |||||||| |||| |||| |
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| T |
26585140 |
ttagtcttcccaaattgatcaagatattttaaaaactcgatcacgtgtgctccactgcatcgtacaagtgtcaatggtggcttgtggttttgtaggtatt |
26585041 |
T |
|
| Q |
396 |
gt |
397 |
Q |
| |
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|| |
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|
| T |
26585040 |
gt |
26585039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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