View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_1 (Length: 681)
Name: NF16719_low_1
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 19 - 662
Target Start/End: Complemental strand, 49756329 - 49755679
Alignment:
| Q |
19 |
tgccaatcccaacatgtttagtgtccccaccacattcgtcttgtgccaaacaattagaatcaaggattccaaaattttaaatcaaataatcatataacat |
118 |
Q |
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| T |
49756329 |
tgccaatcccaacatgtttagtgtccccaccacattcgtcttgtgccaaacaattagaatcaaggattccaaaattttaaatcaaataatcatataacat |
49756230 |
T |
|
| Q |
119 |
atcttttcttatcaaagtggttcaccatgattctgatgatacattgtcatgtcaaatatcataggcacagacgtgtgacacaatacttacatttattaca |
218 |
Q |
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| T |
49756229 |
at-ttttcttatcaaaatggttcaccataattctgatgatacattgtcatgtcaaatatcataggcacagacgtgtgacacaatacttacattta---ca |
49756134 |
T |
|
| Q |
219 |
tgtcaagaatggtagtaatttgggaaaaattatataatagaacgtaa------tcatat-gtgtcagacgcgtgtacttgtcgcgtgcaaaacatgcttt |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
49756133 |
tgttaagaatggtagtaatttgggaaaaattatataatagaaaatcacatgtgtcaaattgtgtcagacgcgtgtacttgtcgcgtgcaaaacatgcttt |
49756034 |
T |
|
| Q |
312 |
ggattagaaattttgatcatgcaatatgtaaataataaataaat----ttggaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggg |
407 |
Q |
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| T |
49756033 |
ggattagaaattttgatcatgcaatatgtaaataataaataaataaatttggaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggg |
49755934 |
T |
|
| Q |
408 |
gaagcagggcaagccaagtgatggatctgatcaacttcaagaagaataggttcaacaacatcatgtctaataagttcaaaattgggattaccaagatgat |
507 |
Q |
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| T |
49755933 |
gaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggttcaacaacatcatgtctaataagttcaaaattgggattaccaatatgat |
49755834 |
T |
|
| Q |
508 |
gaacaacgttctctttccttccagtaaaataattatcaatcacgatcacattatcacctctttcaatcaaacgatcaacaagatgacttccaacgaaacc |
607 |
Q |
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| T |
49755833 |
gaacaacattctctttccttccagtaaaataattatcaatcacgatcacattatcacctctttcaatcaaacgatccacaagatgacttccaacgaaacc |
49755734 |
T |
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| Q |
608 |
agctccaccggtaaccagtactctcttctgtctcttgcttttcaatccaacggcc |
662 |
Q |
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| T |
49755733 |
agctccaccggtaaccagtactctcttctgtctcttgcttttcaatccaacggcc |
49755679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 359 - 568
Target Start/End: Original strand, 39567287 - 39567496
Alignment:
| Q |
359 |
gaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatggatctgatcaacttcaagaagaataggt |
458 |
Q |
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||||||||||||||| || ||||| || || ||||||||||||||||| |||||||| ||||| | |||| ||||||||||||||||||||||| ||| |
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| T |
39567287 |
gaaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagcaggacaagcaagatgatagatctgatcaacttcaagaagaagaggc |
39567386 |
T |
|
| Q |
459 |
tcaacaacatcatgtctaataagttcaaaattgggattaccaagatgatgaacaacgttctctttccttccagtaaaataattatcaatcacgatcacat |
558 |
Q |
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||||| || || |||| |||||| ||||| | |||||||||| |||||| | |||||||||||| || || || || ||||||||| || |||||| |
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| T |
39567387 |
tcaacgacgtcgtgtcgaataagctcaaatctcggattaccaaaatgatgcataacgttctcttttctaccggtgaagaaattatcaacaacaatcacac |
39567486 |
T |
|
| Q |
559 |
tatcacctct |
568 |
Q |
| |
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|||| ||||| |
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| T |
39567487 |
tatcccctct |
39567496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 360 - 624
Target Start/End: Complemental strand, 29127210 - 29126946
Alignment:
| Q |
360 |
aaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatggatctgatcaacttcaagaagaataggtt |
459 |
Q |
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|||||||||||||| ||||||| ||| ||| |||| ||||||||||| |||||||| || || | |||| |||||||||||| ||||| | ||| || | |
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| T |
29127210 |
aaaaaggatatgattgtcttgatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaagcaaaatcggat |
29127111 |
T |
|
| Q |
460 |
caacaacatcatgtctaataagttcaaaattgggattaccaagatgatgaacaacgttctctttccttccagtaaaataattatcaatcacgatcacatt |
559 |
Q |
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||||||||||||| | ||| | ||||| | || || |||| |||||| | ||||||||||| ||||||||| |||||||||| || || |||| |
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| T |
29127110 |
caacaacatcatgacgaattaactcaaacctagggttcccaaacaaatgaaccaaattctctttcctaccagtaaaaaaattatcaataacaataacatc |
29127011 |
T |
|
| Q |
560 |
atcacctctttcaatcaaacgatcaacaagatgacttccaacgaaaccagctccaccggtaacca |
624 |
Q |
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|| ||||| ||||||| |||||| |||||||||||||| |||||||| ||||||||||||| |
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| T |
29127010 |
attccctctaccaatcaacttatcaaccagatgacttccaacaaaaccagcaccaccggtaacca |
29126946 |
T |
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Back To:
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