View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_10 (Length: 358)
Name: NF16719_low_10
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 11231081 - 11230899
Alignment:
| Q |
25 |
ggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgttgcttagcacgggatcacactggtt |
124 |
Q |
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| T |
11231081 |
ggagcagccgaacattggcacaacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttaggttgcttagcacgggatcacactggtt |
11230982 |
T |
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| Q |
125 |
tgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
207 |
Q |
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| T |
11230981 |
tgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
11230899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 204 - 350
Target Start/End: Complemental strand, 11230490 - 11230344
Alignment:
| Q |
204 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
303 |
Q |
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| T |
11230490 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
11230391 |
T |
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| Q |
304 |
tcctatatccaacggtggttgcttaggagtgattccccgtctctgct |
350 |
Q |
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| T |
11230390 |
tcctatatccaacgatggttgcttaggagtgattccccgtctctgct |
11230344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 11243268 - 11243086
Alignment:
| Q |
25 |
ggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgttgcttagcacgggatcacactggtt |
124 |
Q |
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|||| |||||||| |||||||| || ||| || |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
11243268 |
ggagtagccgaacgttggcacggcagagattaacatagatgcaggatgttttcaaaatggcacaactggttaggttgcttagcacgggatcacactgttt |
11243169 |
T |
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| Q |
125 |
tgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
207 |
Q |
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|||||||||| |||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
11243168 |
tgttgtaatgctgcagtaaccaaaaattccgcattagtctcagaccaacatacaatgtatctttgtgtgattggtgctgttat |
11243086 |
T |
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