View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_13 (Length: 341)
Name: NF16719_low_13
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 2529262 - 2529595
Alignment:
| Q |
8 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggagaaacaaaacccggttcacaactaggactggagctaagaacagaagggcaact |
107 |
Q |
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| T |
2529262 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggcgaaacaaaacccggttcacagctaggactggagctaagaacagaagggcaact |
2529361 |
T |
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| Q |
108 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
207 |
Q |
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| T |
2529362 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
2529461 |
T |
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| Q |
208 |
ttatttttaagattggtgaaagttatgaagccatcacttcctaaaactgctatccaagttgcatttgcagcatcagaaaaaataaattgccacaacaaag |
307 |
Q |
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| T |
2529462 |
ttatttttaagattggtgaaagttatgaagccatcacttcctaaaactgctatccaagttgcatttgcagcatcagaaaaaataaattgccacaacaatg |
2529561 |
T |
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| Q |
308 |
atttccttttgtcatagaacttccatgaatttgc |
341 |
Q |
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| T |
2529562 |
atttccttttgtcatagaacttccatgaatttgc |
2529595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 31027961 - 31027917
Alignment:
| Q |
143 |
cacaaggttgtggtgtactacaagaatcttgaggtattcttgttg |
187 |
Q |
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| T |
31027961 |
cacaaggttctggtgtaccacaataatcttgtggtattcttgttg |
31027917 |
T |
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