View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_14 (Length: 335)
Name: NF16719_low_14
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 43307469 - 43307773
Alignment:
| Q |
13 |
attatactaaaactctaacacaacaaaacctcatccacaaatacaaccaaaaggatgtatccctaagattaccaaatatattaaacatttttccaaaaag |
112 |
Q |
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| T |
43307469 |
attatactaaaactctaacacaacaaaacctcatccacaaatacaaccaaaaggatgtatccctaagattaccaaatatattaaacatttttccaaaaag |
43307568 |
T |
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| Q |
113 |
ccaaattgtgatcccaccacttcttttacttattcttaagggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacat |
212 |
Q |
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| T |
43307569 |
ccaaattgtgatcccaccacctcttttacttattcttaagggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacat |
43307668 |
T |
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| Q |
213 |
gtccaaggtttccaatccaggtaattcccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaa |
312 |
Q |
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| T |
43307669 |
gtccaaggtttccaatccaggtaattcccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaa |
43307768 |
T |
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| Q |
313 |
cccct |
317 |
Q |
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||||| |
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| T |
43307769 |
cccct |
43307773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 43267008 - 43267176
Alignment:
| Q |
152 |
gggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacatgtccaaggtttc--caat-ccaggtaattcccaattaaa |
248 |
Q |
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| T |
43267008 |
gggttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcagcaccaggtaattcccagttaaa |
43267107 |
T |
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| Q |
249 |
ttgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaacccct |
317 |
Q |
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| T |
43267108 |
ttgatgtacaaggtttgccaacacaagatcattgacagccgtagcataaactgccccaggacaacccct |
43267176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 43286809 - 43286977
Alignment:
| Q |
152 |
gggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacatgtccaaggtttc--caat-ccaggtaattcccaattaaa |
248 |
Q |
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| T |
43286809 |
gggttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcagcaccaggtaattcccagttaaa |
43286908 |
T |
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| Q |
249 |
ttgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaacccct |
317 |
Q |
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| T |
43286909 |
ttgatgtacaaggtttgccaacacaagatcattgacagccgtagcataaactgccccaggacaacccct |
43286977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 43274353 - 43274441
Alignment:
| Q |
229 |
ccaggtaattcccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaacccct |
317 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||| | |||||||| |||| ||||| |||||||| |
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| T |
43274353 |
ccaggtaattcccaatcaaattgatgtataagattggctaacacaatttcattggcagctatagcatacactactccagggcaacccct |
43274441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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