View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_15 (Length: 332)
Name: NF16719_low_15
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 34087026 - 34087341
Alignment:
| Q |
7 |
ggagcagagatatgagacaggtatttttgctaggtccagaatttaaaaactccagcagtagcaannnnnnnaaatcttcctatttttagggagagtgaac |
106 |
Q |
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| T |
34087026 |
ggagctgagatatgagacaggtatttttgctaggtccagaatttaaaaactccagcagtagcaatttttttaaatcttcctatttttagggagactgaac |
34087125 |
T |
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| Q |
107 |
tctagtaatctaaaattccatattagatgatatgt-----aagtatctttattagcactcgtttgttgagccttaacgtttgtcgtgattctggtaagtc |
201 |
Q |
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| T |
34087126 |
tctagtaatctaaaattccatattagatgatatgtaatgtaagtatctttattagcgcttgtttgttgagccttaacgtttattgtgattctgataagtt |
34087225 |
T |
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| Q |
202 |
tcaaagtccaactcacctaaacttttgattataaggaaaaagtttcaattaaagaatttgaattaaattttgagttagtaaaagcacataaatataaaca |
301 |
Q |
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| T |
34087226 |
ttaaagtccaactcacctaaacttttgattataaggaaaaagtttcaattaaagaattcgaattaaattttgagttagtaaaaacacataaatataacca |
34087325 |
T |
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| Q |
302 |
tcttattgatatgaat |
317 |
Q |
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| T |
34087326 |
tcttattgatatgaat |
34087341 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 44267460 - 44267527
Alignment:
| Q |
162 |
gtttgttgagccttaacgtttgtcgtgattctggtaagtctcaaagtccaactcacctaaacttttga |
229 |
Q |
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| T |
44267460 |
gtttgttgcgccttgatgtttgtcatgattatggtgagtctcgcagaccaactcacctaaacttttga |
44267527 |
T |
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