View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_16 (Length: 326)
Name: NF16719_low_16
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_16 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 18557870 - 18558182
Alignment:
| Q |
14 |
agttaataatttaaattggcgtattttttacagttgtgtcatagcatagtactaaatatatcttgcaagtaaaaatataaccaattttttacttatataa |
113 |
Q |
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| T |
18557870 |
agttaataatttaaattggcgtatttttcacagttgtgtcaaagcatagtactaaatatatcttgcaagtaaaaatatagccaattttttacttatataa |
18557969 |
T |
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| Q |
114 |
gaaattctataaaactcgtgcatcgcacgtgttacagtctagttataatataaactcttattctattttcttatcagcctcaaaaattagggttttcatt |
213 |
Q |
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| T |
18557970 |
gaaattctataaaactcgtgcatcgcacgtgttacagtctagttataatataaactcttattctattttcttatcagcctcaaaaattagggttttcatt |
18558069 |
T |
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| Q |
214 |
ttgtgttcggcacgcctcaaaatgggagcatttgaagagttgccggaagagtgcatcgtcgccatactctctcgtatgactccggatgaagttggcaggc |
313 |
Q |
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| T |
18558070 |
ttgtgttcggcacgcctcaaaatgggagcatttgaagagttgccggaagagtgcttcgtcgccatactctctcgtatgactccggatgacgttggcaggc |
18558169 |
T |
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| Q |
314 |
tctccgtcgtttc |
326 |
Q |
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| T |
18558170 |
tctccgtcgtttc |
18558182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 15256139 - 15256086
Alignment:
| Q |
103 |
tacttatataagaaattctataaaactcgtgcatcgcacgtgttacagtctagt |
156 |
Q |
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| T |
15256139 |
tacttatatatgaaactctataaaactcgtacatcgtacgggttagagtctagt |
15256086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 35223227 - 35223135
Alignment:
| Q |
234 |
aatgggagcatttgaagagttgccggaagagtgcatcgtcgccatactctctcgtatgactccggatgaagttggcaggctctccgtcgtttc |
326 |
Q |
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| T |
35223227 |
aatgggagcgtttgaagagttaccggaagggtgcatcgccgccgtgctctctcttacaactccggctgacgccggcagactcgccgtcgtttc |
35223135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 35250047 - 35249985
Alignment:
| Q |
234 |
aatgggagcatttgaagagttgccggaagagtgcatcgtcgccatactctctcgtatgactcc |
296 |
Q |
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| T |
35250047 |
aatgggtgcttttgatgaattgccggaagagtgcattgccgccatactctctcgaacgactcc |
35249985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 16639325 - 16639219
Alignment:
| Q |
52 |
tcatagcatagtactaaatatatct-tgcaagtaaaaatataaccaattttttacttatataagaaattctataaaactcgtgcatcgcacgtgttacag |
150 |
Q |
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| T |
16639325 |
tcatagcataatattgaatatatttgtgaaagtaaaaatatagccaatttgatgcttaaatacaaaattctacaacactcatgcatcgcacgggttagag |
16639226 |
T |
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| Q |
151 |
tctagtt |
157 |
Q |
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| T |
16639225 |
tctagtt |
16639219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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