View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16719_low_17 (Length: 318)

Name: NF16719_low_17
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16719_low_17
NF16719_low_17
[»] chr1 (36 HSPs)
chr1 (1-278)||(15468255-15468532)
chr1 (146-274)||(41948159-41948287)
chr1 (187-300)||(50539137-50539250)
chr1 (145-301)||(30678923-30679079)
chr1 (146-233)||(8899094-8899181)
chr1 (145-275)||(19101613-19101743)
chr1 (186-272)||(28218101-28218187)
chr1 (174-274)||(931413-931513)
chr1 (145-272)||(8741235-8741362)
chr1 (145-218)||(37552963-37553034)
chr1 (145-266)||(15906458-15906578)
chr1 (145-274)||(26980274-26980403)
chr1 (145-275)||(32848594-32848725)
chr1 (151-222)||(33193141-33193212)
chr1 (145-207)||(16948541-16948603)
chr1 (199-277)||(36566932-36567010)
chr1 (187-277)||(49730900-49730990)
chr1 (228-305)||(13388434-13388511)
chr1 (200-272)||(29418522-29418594)
chr1 (183-275)||(39499433-39499524)
chr1 (167-275)||(41958121-41958229)
chr1 (155-305)||(29673485-29673633)
chr1 (204-275)||(41918033-41918104)
chr1 (200-275)||(43832307-43832382)
chr1 (186-277)||(45179299-45179390)
chr1 (148-222)||(10659784-10659857)
chr1 (145-275)||(32211796-32211926)
chr1 (178-232)||(33114052-33114106)
chr1 (145-275)||(15523248-15523374)
chr1 (145-275)||(15531242-15531368)
chr1 (145-275)||(22540406-22540532)
chr1 (187-232)||(37525610-37525655)
chr1 (178-275)||(44271956-44272053)
chr1 (175-275)||(3872676-3872775)
chr1 (255-283)||(5291646-5291674)
chr1 (247-283)||(32120363-32120399)
[»] chr3 (30 HSPs)
chr3 (146-295)||(29588746-29588895)
chr3 (145-277)||(29755536-29755668)
chr3 (147-301)||(18427164-18427318)
chr3 (145-274)||(41451907-41452036)
chr3 (146-271)||(48351478-48351603)
chr3 (145-274)||(24734744-24734873)
chr3 (145-275)||(28529291-28529419)
chr3 (145-277)||(5452074-5452204)
chr3 (145-277)||(20493457-20493589)
chr3 (145-275)||(20791334-20791464)
chr3 (145-222)||(52123968-52124045)
chr3 (167-275)||(138801-138909)
chr3 (145-277)||(27243081-27243214)
chr3 (155-275)||(46450103-46450224)
chr3 (153-275)||(37776723-37776845)
chr3 (187-277)||(41707493-41707583)
chr3 (162-222)||(24429054-24429114)
chr3 (150-233)||(29388611-29388694)
chr3 (188-275)||(41387599-41387686)
chr3 (155-274)||(55452037-55452156)
chr3 (145-275)||(14236057-14236187)
chr3 (145-215)||(38138594-38138664)
chr3 (266-300)||(40716007-40716041)
chr3 (167-253)||(41607471-41607557)
chr3 (145-275)||(46160985-46161115)
chr3 (148-222)||(50156675-50156749)
chr3 (271-300)||(10798275-10798304)
chr3 (212-277)||(30624667-30624732)
chr3 (187-275)||(26310500-26310588)
chr3 (145-249)||(39186028-39186132)
[»] chr2 (25 HSPs)
chr2 (145-266)||(38464210-38464331)
chr2 (145-275)||(12989229-12989359)
chr2 (170-234)||(7919307-7919371)
chr2 (145-277)||(44274270-44274402)
chr2 (174-277)||(9470117-9470220)
chr2 (145-266)||(25238289-25238411)
chr2 (187-275)||(18511263-18511351)
chr2 (148-275)||(26767776-26767903)
chr2 (167-270)||(32701513-32701616)
chr2 (168-274)||(35316436-35316542)
chr2 (167-277)||(3804620-3804731)
chr2 (145-275)||(6980132-6980262)
chr2 (162-276)||(36471867-36471981)
chr2 (178-275)||(17188103-17188200)
chr2 (261-305)||(40947299-40947343)
chr2 (145-220)||(14489551-14489626)
chr2 (174-277)||(34142180-34142283)
chr2 (145-220)||(45554652-45554727)
chr2 (215-277)||(13341709-13341771)
chr2 (148-241)||(472178-472271)
chr2 (146-275)||(11539461-11539593)
chr2 (271-304)||(11729753-11729786)
chr2 (145-234)||(15884508-15884597)
chr2 (224-277)||(42579748-42579801)
chr2 (146-274)||(30718340-30718467)
[»] chr6 (19 HSPs)
chr6 (145-277)||(34905372-34905504)
chr6 (145-277)||(10133170-10133302)
chr6 (147-275)||(21987330-21987458)
chr6 (187-254)||(12780813-12780880)
chr6 (147-277)||(5106334-5106464)
chr6 (145-218)||(32112729-32112802)
chr6 (155-275)||(445856-445976)
chr6 (187-271)||(12784993-12785077)
chr6 (146-271)||(32598961-32599086)
chr6 (155-282)||(2675926-2676053)
chr6 (155-277)||(31116146-31116268)
chr6 (145-266)||(1392675-1392795)
chr6 (145-222)||(16851985-16852062)
chr6 (259-300)||(34882241-34882282)
chr6 (244-300)||(6992281-6992337)
chr6 (150-222)||(8441866-8441938)
chr6 (150-222)||(8450670-8450742)
chr6 (167-219)||(17144705-17144757)
chr6 (204-272)||(35128794-35128862)
[»] chr7 (31 HSPs)
chr7 (145-271)||(44350814-44350940)
chr7 (145-275)||(22189977-22190107)
chr7 (148-225)||(6442253-6442330)
chr7 (146-275)||(39254121-39254250)
chr7 (145-277)||(27888318-27888450)
chr7 (145-275)||(11824109-11824237)
chr7 (149-210)||(19422850-19422911)
chr7 (155-271)||(12263458-12263574)
chr7 (186-253)||(32605391-32605458)
chr7 (145-251)||(6580014-6580120)
chr7 (145-275)||(46517329-46517459)
chr7 (145-222)||(27949364-27949441)
chr7 (145-274)||(48374451-48374580)
chr7 (167-274)||(7459382-7459489)
chr7 (223-285)||(29462092-29462154)
chr7 (187-273)||(36845576-36845661)
chr7 (148-280)||(2911794-2911927)
chr7 (146-275)||(7775038-7775166)
chr7 (175-275)||(33008142-33008242)
chr7 (266-301)||(19422979-19423014)
chr7 (174-277)||(31502505-31502608)
chr7 (196-275)||(44510999-44511078)
chr7 (200-274)||(19494406-19494480)
chr7 (244-278)||(27320260-27320294)
chr7 (148-201)||(7774956-7775009)
chr7 (147-272)||(14795172-14795297)
chr7 (147-272)||(15242164-15242289)
chr7 (204-301)||(19840956-19841053)
chr7 (145-277)||(24539134-24539267)
chr7 (145-222)||(25686847-25686924)
chr7 (217-285)||(41508359-41508427)
[»] chr4 (31 HSPs)
chr4 (146-275)||(20454578-20454705)
chr4 (183-301)||(38636347-38636467)
chr4 (145-274)||(43771165-43771294)
chr4 (148-276)||(24938430-24938558)
chr4 (145-275)||(8108994-8109124)
chr4 (146-275)||(47009227-47009356)
chr4 (145-301)||(26361320-26361480)
chr4 (145-275)||(34129412-34129542)
chr4 (148-275)||(722195-722322)
chr4 (148-275)||(50164433-50164560)
chr4 (148-222)||(754595-754669)
chr4 (145-266)||(24834625-24834746)
chr4 (145-277)||(37451025-37451155)
chr4 (145-270)||(39471200-39471325)
chr4 (166-222)||(31250916-31250972)
chr4 (178-253)||(49682836-49682911)
chr4 (183-278)||(50652386-50652480)
chr4 (200-277)||(2088732-2088809)
chr4 (150-210)||(40991606-40991666)
chr4 (145-272)||(43958192-43958316)
chr4 (162-234)||(45310977-45311049)
chr4 (145-253)||(49242230-49242338)
chr4 (145-275)||(13069979-13070109)
chr4 (195-233)||(2860957-2860995)
chr4 (148-210)||(38537528-38537590)
chr4 (145-218)||(19937184-19937257)
chr4 (212-277)||(33996014-33996079)
chr4 (174-275)||(50481586-50481687)
chr4 (187-275)||(20225395-20225483)
chr4 (174-277)||(48339381-48339484)
chr4 (187-275)||(49077287-49077375)
[»] chr8 (19 HSPs)
chr8 (147-275)||(1977187-1977315)
chr8 (145-275)||(16983432-16983562)
chr8 (178-274)||(11962727-11962822)
chr8 (195-305)||(13214503-13214613)
chr8 (145-222)||(6098789-6098866)
chr8 (174-277)||(8914807-8914910)
chr8 (147-222)||(17499247-17499322)
chr8 (145-264)||(36804851-36804970)
chr8 (145-275)||(45246472-45246602)
chr8 (145-222)||(24055937-24056014)
chr8 (169-253)||(8903912-8903996)
chr8 (183-275)||(32072135-32072227)
chr8 (188-301)||(9192015-9192126)
chr8 (145-218)||(7493354-7493427)
chr8 (145-275)||(23685169-23685295)
chr8 (178-266)||(4319778-4319866)
chr8 (151-275)||(9952775-9952899)
chr8 (145-253)||(28413882-28413989)
chr8 (272-300)||(35819139-35819167)
[»] scaffold0018 (1 HSPs)
scaffold0018 (147-275)||(27850-27978)
[»] chr5 (16 HSPs)
chr5 (145-275)||(30325886-30326016)
chr5 (155-275)||(10141998-10142118)
chr5 (167-274)||(5413771-5413878)
chr5 (145-222)||(28490734-28490811)
chr5 (174-275)||(43405431-43405532)
chr5 (174-277)||(34368396-34368499)
chr5 (145-270)||(41105582-41105707)
chr5 (212-269)||(43541895-43541952)
chr5 (145-277)||(28611790-28611922)
chr5 (145-277)||(34384703-34384835)
chr5 (145-275)||(27592464-27592594)
chr5 (147-221)||(28223790-28223864)
chr5 (148-277)||(32401153-32401283)
chr5 (174-275)||(17537143-17537244)
chr5 (174-222)||(28090270-28090318)
chr5 (187-271)||(41330447-41330531)
[»] scaffold0543 (1 HSPs)
scaffold0543 (187-301)||(9678-9790)
[»] scaffold0492 (1 HSPs)
scaffold0492 (187-301)||(11224-11336)
[»] scaffold0204 (1 HSPs)
scaffold0204 (174-277)||(26903-27006)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 15468532 - 15468255
Alignment:
Q  1 atataggccacaatttcatccacgcaatgagagttttctataagaagacggcaccattattccattgatcttgcccttgcttcctcacatatgtagttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15468532 atataggccacaatttcatccacgcaatgagagttttctataagaagacggcaccattattccattgatcttgcccttgcttcctcacatatgtagttat 15468433  T
Q  101 ggcccatcttatcatgacattgtttcaattccttgtaaagagccctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtg 200  Q
    | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  15468432 gtcccatcttatcatgacattgtttcaattccttgcaaggagccctctcttttgaacactatctcaaatacttactcttttattaatttaaattattgtg 15468333  T
Q  201 gatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttg 278  Q
    | |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  15468332 ggtctacactatgaaaattgaacccacacaaagtaatgagacatacattgattctatttaataaaagagtgagtgttg 15468255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 41948159 - 41948287
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||||| |||| || ||| ||||| || ||||||||||||||||||||| |||||| ||||||||||| | ||| |||||  |   |||||    
T  41948159 tctcttttgaacactctctctaacactcactctcttattgatttaaatcattgtggatttacactttgaaaattgaaccaacacaaagtggtagaatata 41948258  T
Q  246 cattgattctattcaataaaagagtgagt 274  Q
    |||||||| ||| ||||||||||||||||    
T  41948259 cattgattttatccaataaaagagtgagt 41948287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 50539250 - 50539137
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtga 286  Q
    |||||||||||| |  ||||||||  |||||||||| |||||||||||  ||  | |||| ||||||  || |||||||||||||||||||||||| |||    
T  50539250 tttaaatcattgcgtgtctacactgagaaaattgaacccacataaagtggtggaacatactttgatttcatccaataaaagagtgagtgttgaaaaatga 50539151  T
Q  287 gtgttgctaacatt 300  Q
    ||||||||||||||    
T  50539150 gtgttgctaacatt 50539137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 301
Target Start/End: Original strand, 30678923 - 30679079
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||| |||||| |||| |||| || ||| ||||| || |||  |||||||||||||  |||||||| ||||||||||| ||||| |||||  || || ||    
T  30678923 ctcttttttgagcactctctctaacactcactctcttattggcttaaatcattgtgagtctacactttgaaaattgaacccacacaaagtggtgggacat 30679022  T
Q  245 acattgattctattcaataaaagagtgagtgttgaaaagtgagtgttgctaacattc 301  Q
    ||||||||| ||| || | |||||||||| | | ||||||||||||||||| |||||    
T  30679023 acattgattttatccattgaaagagtgagggctcaaaagtgagtgttgctagcattc 30679079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 8899181 - 8899094
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaag 233  Q
    ||||||||||||||| |||| |||||| ||||| || ||| ||||||| |||||||| ||||||| ||||||||||| ||||| ||||    
T  8899181 tctcttttgaacactctctctaatactcactctcttattggtttaaattattgtggacctacactttgaaaattgaacccacacaaag 8899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 19101613 - 19101743
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||| | || ||| ||||||||||||  |||||||||| ||||||| |||  | ||||||||  || || ||    
T  19101613 ctctcttttgaacactctctctaatactcactttcttattggtttaaatcattgcagatctacactttgaaaatagaactcgcataaagtggtgggacat 19101712  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  19101713 acattgatttcatccaataaaatagtgagtg 19101743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 28218101 - 28218187
Alignment:
Q  186 atttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtga 272  Q
    |||||||| | ||||| |||||||| ||||||||||||||||| |||||  ||||| |||||||||||  || ||||||||||||||    
T  28218101 atttaaattactgtggttctacactttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagagtga 28218187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 931513 - 931413
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    |||||||| ||| ||||||||||||||| | || | | ||||||||||| ||||| ||| | ||| || |||||||| ||| ||||||||||||||||||    
T  931513 actcttttattggtttaaatcattgtgggtgtatattttgaaaattgaacccacaaaaaatgatgggacatacattgcttccattcaataaaagagtgag 931414  T
Q  274 t 274  Q
    |    
T  931413 t 931413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 272
Target Start/End: Original strand, 8741235 - 8741362
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||| | |||| |||||| ||||| || ||  ||||||||||||||  | || ||| ||||||||||| ||||| ||| || ||||| ||    
T  8741235 ctctcttttgaacaatttctctaatactcactctcttattagtttaaatcattgtgtgtttatactttgaaaattgaacccacacaaattagtgagacat 8741334  T
Q  245 acattgattctattcaataaaagagtga 272  Q
    |||||||||  || |||||||| |||||    
T  8741335 acattgatttcatccaataaaaaagtga 8741362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 37552963 - 37553034
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaat 218  Q
    |||||||||||||||| | |  |||||| ||||| || |||||||||||||||||||||||||||| |||||||    
T  37552963 ctctcttttgaacactcttt--aatactcactctcttattgatttaaatcattgtggatctacactttgaaaat 37553034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 15906578 - 15906458
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||| |||||| |||||| | || ||| |||||||||||||||||  ||||||| | || ||||||| | |||| ||||| ||| || ||    
T  15906578 ctctctttttaacattatctctaatactcattcgtttattgatttaaatcattgtaaatctacattttgtaaattgagttcacacaaagtgatg-gacat 15906480  T
Q  245 acattgattctattcaataaaa 266  Q
    ||||||||| ||| ||||||||    
T  15906479 acattgattttatgcaataaaa 15906458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 26980274 - 26980403
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||||| |||  |||||| ||||| || ||||||||||||||||||||| || | | |||||||||||  |||| ||| |  || || ||    
T  26980274 ctctcttttcaacactctctataatactcactctcttattgatttaaatcattgtggatgtatattttgaaaattgaactcacacaaaatggtgggacat 26980373  T
Q  245 acattgattctattcaataaaagagtgagt 274  Q
    |||||||||  || |||||| |||||||||    
T  26980374 acattgatttcatccaataatagagtgagt 26980403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 32848594 - 32848725
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgt-ggatctacactatgaaaattgaatccacataaagtaatgagata 243  Q
    ||||||||||| |||| |||| |  |||||||||||| ||| || || ||| ||| ||| ||||||| ||||||| |||||||||||||||  || || |    
T  32848594 ctctcttttgagcactttctctagcacttactcttttattggttgaattcaatgtaggacctacactttgaaaatggaatccacataaagtggtgggaca 32848693  T
Q  244 tacattgattctattcaataaaagagtgagtg 275  Q
    |||| |||||  |  |||||||||||||||||    
T  32848694 tacaatgatttcacccaataaaagagtgagtg 32848725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 33193212 - 33193141
Alignment:
Q  151 tttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||| |||| |||||| | ||| || ||| ||||||||||||||| |||||||| |||||||||||    
T  33193212 tttgaacactttctctaatactcattctcttattggtttaaatcattgtgggtctacactttgaaaattgaa 33193141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 16948541 - 16948603
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctac 207  Q
    |||||| ||||||| | |||| |||||| ||||| || |||||||||||||||||||||||||    
T  16948541 ctctctgttgaacattttctctaatactcactctcttattgatttaaatcattgtggatctac 16948603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 36567010 - 36566932
Alignment:
Q  199 tggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||||| ||||||| ||| ||| ||||||| |||||| |||||||||||  || |||||||| ||| ||||||    
T  36567010 tggatctacactttgaaaatagaacccaaataaagtgatgagacatacattgatttcatccaataaaatagtaagtgtt 36566932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 49730990 - 49730900
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |||||| || || ||| |||  ||  ||  ||||||||||||||||||    
T  49730990 tttaaatcattgtgggtctacactttgaaaattgaacccacacaaagtagtgtgacatatattagtttaatctaataaaagagtgagtgtt 49730900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 13388434 - 13388511
Alignment:
Q  228 ataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtgagtgttgctaacattcatct 305  Q
    |||||||  ||||| |||||||||||  |  ||||||||||||||||| | ||||| ||||||||||| |||||||||    
T  13388434 ataaagtggtgagacatacattgatttcacccaataaaagagtgagtgctcaaaagagagtgttgctagcattcatct 13388511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 29418594 - 29418522
Alignment:
Q  200 ggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtga 272  Q
    ||||||||||| || |||| |||  ||||||||||  ||||||||||||| ||| ||| ||||||||||||||    
T  29418594 ggatctacactttggaaatagaactcacataaagtggtgagatatacattaattttatccaataaaagagtga 29418522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 39499524 - 39499433
Alignment:
Q  183 ttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    |||| ||||||||||||||||||||| | |||||||||||  |||| ||||| ||  || ||||||||||| |||  ||| ||||||||||||    
T  39499524 ttgaattaaatcattgtggatctacattttgaaaattgaactcacaaaaagtgatatgacatacattgattttatctaat-aaagagtgagtg 39499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 41958229 - 41958121
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaa 266  Q
    |||||| ||||| || ||| ||||||||| ||||| |||||||| ||||||||||| || || ||| |  || || |||||||||||  || |||||||     
T  41958229 aatactcactctcttattggtttaaatcactgtgggtctacactttgaaaattgaacccccacaaaatggtgggacatacattgatttcatccaataaat 41958130  T
Q  267 gagtgagtg 275  Q
    |||||||||    
T  41958129 gagtgagtg 41958121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 29673633 - 29673485
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| |||||| ||| |||| ||| ||||||| ||||| | |||||||| ||||||||||| | ||| ||| |  || || ||| |||||||     
T  29673633 aacactctctctaatactcacttttttattggtttaaataattgtagttctacactttgaaaattgaaactacacaaaatggtgggacatatattgattt 29673534  T
Q  255 tattcaataaaagagtgagtgttgaaaagtgagtgttgctaacattcatct 305  Q
    ||| |||||||| | ||||||||  | || |||||||||||  ||||||||    
T  29673533 tatccaataaaataatgagtgtt--agagagagtgttgctagtattcatct 29673485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 41918104 - 41918033
Alignment:
Q  204 ctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||| ||||||| |||||||||||||||  || || |||||||||||  |  |||||||||||||||||    
T  41918104 ctacactttgaaaatggaatccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtg 41918033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 43832382 - 43832307
Alignment:
Q  200 ggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||||||| || ||||  || |||||||||||||||||||||| ||||||  || ||||||||| | ||||||    
T  43832382 ggatctacactttggaaatgaaacccacataaagtaatgagatatatattgatcttactcaataaaatattgagtg 43832307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 45179299 - 45179390
Alignment:
Q  186 atttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    |||||| | ||||||| | |||||| ||||||||||| || || ||||| |||  | ||||||||||| ||||||||||| || ||||||||    
T  45179299 atttaagttattgtgggtttacactttgaaaattgaaccctcacaaagtgatggaacatacattgattttattcaataaatgaatgagtgtt 45179390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 10659784 - 10659857
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||||||| |||| |||||  ||||| || ||| |||||||||| |||| |||||||| |||||||||||    
T  10659784 tcttttgaacactttctctaatacc-actctcttattggtttaaatcatcgtgggtctacactttgaaaattgaa 10659857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 32211796 - 32211926
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||||| |||  |||  | ||||| || ||| ||||||||||||||| |||||||  | |||||||||  |||| |||||| |  || ||    
T  32211796 ctctcttttcaacactttctttaatgatcactctcttattggtttaaatcattgtgggtctacaccttaaaaattgaactcacacaaagtagttggacat 32211895  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  ||  ||||||||||||||||    
T  32211896 acattgatttcatctaataaaagagtgagtg 32211926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 33114106 - 33114052
Alignment:
Q  178 ttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaa 232  Q
    |||| ||| ||||||||||| |||||||||||| ||||||||||| | |||||||    
T  33114106 ttttattggtttaaatcattctggatctacactttgaaaattgaacctacataaa 33114052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 15523374 - 15523248
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| |||    | ||| |||||||||||| ||||||||||| |  |||| |||  | ||||||||  || || ||    
T  15523374 ctctcttttgaacactctctctaatactaact----tattggtttaaatcattgcggatctacactttagaaatagaactcgcataaagtggtgggacat 15523279  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  15523278 acattgatttcatccaataaaatagtgagtg 15523248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 15531368 - 15531242
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| |||    | ||| |||||||||||| ||||||||||| |  |||| |||  | ||||||||  || || ||    
T  15531368 ctctcttttgaacactctctctaatactaact----tattggtttaaatcattgcggatctacactttagaaatagaactcgcataaagtggtgggacat 15531273  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  15531272 acattgatttcatccaataaaatagtgagtg 15531242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 22540532 - 22540406
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||  |||||| |||    | ||| |||||||||||| ||||||||||| || |||| |||  | ||||||||  || || ||    
T  22540532 ctctcttttgaacactctctttaatactaact----tattggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtggtgggacat 22540437  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  22540436 acattgatttcatccaataaaatagtgagtg 22540406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 37525655 - 37525610
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaa 232  Q
    ||||||||||||| |||||| ||| ||||||||||| |||||||||    
T  37525655 tttaaatcattgtagatctagactttgaaaattgaacccacataaa 37525610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 44272053 - 44271956
Alignment:
Q  178 ttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    |||| ||||||||||||||||| | |||||||| ||||||||||| | ||| ||| |  ||  | |||||||||||  ||||||||||| ||| ||||    
T  44272053 ttttattgatttaaatcattgttgttctacactttgaaaattgaacctacaaaaaatggtggaacatacattgatttcattcaataaaatagtaagtg 44271956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 3872676 - 3872775
Alignment:
Q  175 ctcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagt 274  Q
    ||||||| ||| ||| ||||||||||| |||||||| || |||||||| | ||| |||||  || || ||| ||||||| |||| |||| ||||||||||    
T  3872676 ctcttttattggtttgaatcattgtgggtctacactttggaaattgaacctacacaaagtggtgtgacatatattgatt-tatttaatagaagagtgagt 3872774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 5291674 - 5291646
Alignment:
Q  255 tattcaataaaagagtgagtgttgaaaag 283  Q
    |||||||||||||||||||||||||||||    
T  5291674 tattcaataaaagagtgagtgttgaaaag 5291646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 32120399 - 32120363
Alignment:
Q  247 attgattctattcaataaaagagtgagtgttgaaaag 283  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  32120399 attgattatatccaataaaagagtgagtgttgaaaag 32120363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 29588746 - 29588895
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||||| |||  || ||| ||||| || ||||||||||||||||||| |||||||| |||||||||||  |||||||||| |   || |||    
T  29588746 tctcttttgaacactctctataacactcactctcttattgatttaaatcattgtgggtctacactttgaaaattgaactcacataaagtgaaaggacata 29588845  T
Q  246 cattgattctattcaataaaagagtgagtgttgaaaagtgagtgttgcta 295  Q
    |||||||| ||| |||||||||||   |||||||||||||||||||||||    
T  29588846 cattgattttatccaataaaagagcaggtgttgaaaagtgagtgttgcta 29588895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 29755668 - 29755536
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||||||||  ||| ||||| ||| || || ||| ||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||| | ||    
T  29755668 ctctcttttgaacactccctctaatacctaccctcttattggtttaaatcattgttgatctacactttgaaaattgaacccacacaaagtagtgaaacat 29755569  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    | ||||||||||||| ||||||||||| |||||    
T  29755568 atattgattctattcgataaaagagtgggtgtt 29755536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 301
Target Start/End: Original strand, 18427164 - 18427318
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||| ||||||||  |||| |||||| ||||| || ||| ||||||||||||||| |||||||| ||||||| ||| ||||| ||| |  || || ||||    
T  18427164 ctctcttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaatagaacccacacaaaatggtgggacatac 18427263  T
Q  247 attgattctattcaataaaagagtgagtgttgaaaagtgagtgttgctaacattc 301  Q
    |||||||  || ||||||| |||||||||||||||| |||||||||||| |||||    
T  18427264 attgatttcatccaataaatgagtgagtgttgaaaaatgagtgttgctagcattc 18427318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 41451907 - 41452036
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| || ||| ||||||||||||||| ||||| || ||||||||||| ||||| |||||  || || ||    
T  41451907 ctctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctactctttgaaaattgaacccacacaaagtggtgggacat 41452006  T
Q  245 acattgattctattcaataaaagagtgagt 274  Q
    || ||||||  || ||||||||||||||||    
T  41452007 actttgatttcatccaataaaagagtgagt 41452036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 48351603 - 48351478
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||| | |||| ||||||   ||| || ||||||||||||||| ||||| |||||| ||||||||||| ||||| |||||| ||||| |||    
T  48351603 tctcttttgaacattttctctaatactctttctcttattgatttaaatcattatggatatacactttgaaaattgaacccacacaaagtagtgagacata 48351504  T
Q  246 cattgattctattcaataaaagagtg 271  Q
     ||||||| ||| |||||||||||||    
T  48351503 tattgattttatccaataaaagagtg 48351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 24734873 - 24734744
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| || ||| |||||||||||||||  |||| || ||||||||||| ||||| |||||  || || ||    
T  24734873 ctctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggcctactctttgaaaattgaacccacacaaagtggtgggacat 24734774  T
Q  245 acattgattctattcaataaaagagtgagt 274  Q
    || ||||||  || ||||||||||||||||    
T  24734773 actttgatttcatccaataaaagagtgagt 24734744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 28529419 - 28529291
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||  |||| |||||| ||||| || ||| ||||||||||||||| |||||||| ||||||||||| ||||  | |||  || || ||    
T  28529419 ctctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccac--acagtggtgggacat 28529322  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||||||||||||    
T  28529321 acattgatttcatccaataaaagagtgagtg 28529291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 5452074 - 5452204
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| ||||||  |||| || |||||||||||| ||| |  ||||||||  |||||||||||||||| |||||  || || ||    
T  5452074 ctctcttttgaacactctctccaatactcgctctcttattgatttaaatccttggg--tctacacttagaaaattgaatccacacaaagtggtgggaaat 5452171  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||  || |||||||||||||| ||||    
T  5452172 acattgatttcatccaataaaagagtgaatgtt 5452204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 20493457 - 20493589
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| | |||| ||||| || ||| ||||||||||||||| |||||||| |||| |||||| || || |||||  |  || ||    
T  20493457 ctctcttttgaacactctctctattactcactctcttattggtttaaatcattgtgggtctacactttgaatattgaacccccacaaagtggtaggacat 20493556  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||  || ||||||| |||||||||||    
T  20493557 acattgatttcatccaataaatgagtgagtgtt 20493589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 20791464 - 20791334
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||| | || ||| |||||||||||| ||||||||||| || |||| |||  | ||||||||  || || ||    
T  20791464 ctctcttttgaacactctctctaatactcactttcttattggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtggtgggacat 20791365  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  20791364 acattgatttcatccaataaaatagtgagtg 20791334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 52123968 - 52124045
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||||||||| |||| |||||| ||| | || ||| ||||||||||||||| |||||||| |||||||||||    
T  52123968 ctctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattgaa 52124045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 138909 - 138801
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaa 266  Q
    ||||||||||||||| |||||||||||||||||   | |||| | | |||||||||| || | ||| |  ||||| |||||||||||  |||||||||||    
T  138909 aatacttactcttttattgatttaaatcattgtaagtttacattttaaaaattgaatacatacaaaatggtgagacatacattgatttcattcaataaaa 138810  T
Q  267 gagtgagtg 275  Q
    |||||||||    
T  138809 gagtgagtg 138801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 27243214 - 27243081
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatc-tacactatgaaaattgaatccacataaagtaatgagata 243  Q
    |||||||||||||||| | || |||||| ||||| |  |||  |||||||| ||||| || |||||| || |||| ||| |||||||||||  || || |    
T  27243214 ctctcttttgaacactctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtgggaca 27243115  T
Q  244 tacattgattctattcaataaaagagtgagtgtt 277  Q
    | |||||||| ||| |||||||||||||||||||    
T  27243114 tgcattgattttatccaataaaagagtgagtgtt 27243081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 46450224 - 46450103
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccaca-taaagtaatgagatatacattgatt 253  Q
    |||||| |||| |||||| ||||| || ||| ||||||||||||||| |||||||| || |||| ||| |||||  |||||  || || |||||||||||    
T  46450224 aacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgcaaatagaacccacacaaaagtggtgggacatacattgatt 46450125  T
Q  254 ctattcaataaaagagtgagtg 275  Q
    | ||  ||||||||||||||||    
T  46450124 ccatctaataaaagagtgagtg 46450103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 37776723 - 37776845
Alignment:
Q  153 tgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgat 252  Q
    |||||||  |||| |||||| ||||| ||  || ||||||||||||| | |||||||| ||||||||||| ||||| |||||  |  || ||||||||||    
T  37776723 tgaacaccctctctaatactcactctcttagtggtttaaatcattgtaggtctacactttgaaaattgaacccacacaaagtggtaggacatacattgat 37776822  T
Q  253 tctattcaataaaagagtgagtg 275  Q
    |  ||  ||||||||||||||||    
T  37776823 ttcatctaataaaagagtgagtg 37776845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 41707493 - 41707583
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    ||||||| ||||||| |||| ||| | ||||||||| ||||| ||||| |||| | ||||||||||| ||| |||| | ||||||||||||    
T  41707493 tttaaattattgtgggtctatactttaaaaattgaacccacacaaagtgatgaaacatacattgattttatccaatgagagagtgagtgtt 41707583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 24429054 - 24429114
Alignment:
Q  162 tctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||| |||||| ||| |||| ||| |||||||||||||||||||||||| | |||||||||    
T  24429054 tctctaatactcactattttattggtttaaatcattgtggatctacactttaaaaattgaa 24429114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 29388611 - 29388694
Alignment:
Q  150 ttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaag 233  Q
    ||||||||||| |||| || ||  ||||| || |||| |||||||||||||  |||||||| ||||||||||| ||| ||||||    
T  29388611 ttttgaacactctctctaacacccactctcttattgacttaaatcattgtgagtctacactttgaaaattgaacccatataaag 29388694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 41387686 - 41387599
Alignment:
Q  188 ttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    |||||||||||||| ||| |||| |||||||| || ||||| ||| || || ||||||||| ||||  || ||||||| |||||||||    
T  41387686 ttaaatcattgtgggtctgcactttgaaaattaaacccacacaaaatagtgtgatatacatcgatttaatccaataaatgagtgagtg 41387599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 55452037 - 55452156
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| |||||| |||||||  ||| ||||||||||| ||  |||||||| || |||| ||| ||||| |||||  || || ||||||  ||||    
T  55452037 aacactctctctaatactcactctttcattggtttaaatcattatgagtctacactttggaaatagaacccacacaaagtggtgggacatacatgtattc 55452136  T
Q  255 tattcaataaaagagtgagt 274  Q
     || ||||||||||||||||    
T  55452137 catccaataaaagagtgagt 55452156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 14236187 - 14236057
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||| ||||||||||| | || |||||| ||| |||| ||| | ||||| |||||||||||||||| || |||| |||  | ||||||||  || || ||    
T  14236187 ctctgttttgaacactctttctaatactcacttttttattggtctaaattattgtggatctacactttggaaatagaactcgcataaagtggtgggacat 14236088  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    | |||||||  || |||||||| ||||||||    
T  14236087 atattgatttcatccaataaaatagtgagtg 14236057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 38138594 - 38138664
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaa 215  Q
    ||||||||||| |||| | |  |||||||||||| || ||| |||||||||||||||||||| ||| ||||    
T  38138594 ctctcttttgatcactttatttaatacttactctcttattggtttaaatcattgtggatctatactttgaa 38138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 40716007 - 40716041
Alignment:
Q  266 agagtgagtgttgaaaagtgagtgttgctaacatt 300  Q
    |||| ||||||||||||||||||||||||||||||    
T  40716007 agagagagtgttgaaaagtgagtgttgctaacatt 40716041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 41607557 - 41607471
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgatt 253  Q
    |||| ||| |||||| ||||||||||| | |||||||||||||| |||||||| ||  |||| ||| || ||||| ||| |||||||    
T  41607557 aataattattcttttattgatttaaataactgtggatctacactttgaaaattaaactcacacaaaatagtgagacatatattgatt 41607471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 46161115 - 46160985
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||| ||| ||||| |||| |||||| ||||| || ||| ||||||||||| |||||||||||| || |||| ||| | ||| |||||  |  || ||    
T  46161115 ctctctcttggacactctctctaatactcactctcttattggtttaaatcattatggatctacactttggaaatagaaccaacacaaagtggtcggacat 46161016  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
      |||||||  || |||||||||||||||||    
T  46161015 gtattgatttcatccaataaaagagtgagtg 46160985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 50156675 - 50156749
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||||||| | |  |||||| ||||| || ||| ||||||||||||||| |||||||| | |||||||||    
T  50156675 tcttttgaacactctttgtaatactcactctcttattggtttaaatcattgtgggtctacacttttaaaattgaa 50156749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 10798304 - 10798275
Alignment:
Q  271 gagtgttgaaaagtgagtgttgctaacatt 300  Q
    ||||||||||||||||||||||||||||||    
T  10798304 gagtgttgaaaagtgagtgttgctaacatt 10798275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 30624732 - 30624667
Alignment:
Q  212 tgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||||  |||| |||||  ||| | ||||||| ||| |||||||||||||||||||||||    
T  30624732 tgaaaattgaactcacacaaagtggtgaaacatacattaattttattcaataaaagagtgagtgtt 30624667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 26310500 - 26310588
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||||||| ||| |||||||| ||||||||||| | ||| ||| |  || || |||||||||||  || |||||||||||| ||||    
T  26310500 tttaaatcattatgggtctacactttgaaaattgaaccaacaaaaaatggtgggacatacattgatttcatccaataaaagagtaagtg 26310588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 39186132 - 39186028
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||| ||| |||| |||||   |||| || ||||||||||||||||  |||||||||| || |||| |||  | ||||||||  ||||| ||    
T  39186132 ctctcttttgaatactctctccaataccctctctcttattgatttaaatcattgcagatctacactttggaaatagaactcgcataaagtggtgagacat 39186033  T
Q  245 acatt 249  Q
    |||||    
T  39186032 acatt 39186028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 38464331 - 38464210
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||||||||| || ||| ||||||||||||||| |||||||| ||||||||||| ||||  ||||| |||||| ||    
T  38464331 ctctcttttgaacactctctctaatacttactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccacgcaaagtgatgagacat 38464232  T
Q  245 acattgattctattcaataaaa 266  Q
    |||||||||  || ||||||||    
T  38464231 acattgatttcatacaataaaa 38464210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 12989359 - 12989229
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| || ||| ||||||||||||||| ||||||||  | |||| ||||||| | |||||  || || ||    
T  12989359 ctctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacacttcggaaatagaatccatacaaagtggtgggacat 12989260  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||| ||||||||||||    
T  12989259 acattgatttcatccaatgaaagagtgagtg 12989229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 7919307 - 7919371
Alignment:
Q  170 acttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagt 234  Q
    ||||||||| || ||| |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  7919307 acttactctcttattggtttaaatcattgtggatctacactttgaaaattgaatccacacaaagt 7919371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 44274402 - 44274270
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| || | | |||| || ||| ||||| || ||| |||||||||||||||||||||||| ||||| ||||| ||||| |||||  || || ||    
T  44274402 ctctcttttaaatattctctctaacactcactctgttattggtttaaatcattgtggatctacactttgaaagttgaacccacacaaagtggtgggacat 44274303  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    ||||||||| ||| |||| ||||||||| ||||    
T  44274302 acattgattttatccaatgaaagagtgaatgtt 44274270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 9470220 - 9470117
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| ||||||||||||||| |||||||| ||||||||||| ||| | |||||  || || |||||||||||  || |||||||||||||||    
T  9470220 actctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgag 9470121  T
Q  274 tgtt 277  Q
    ||||    
T  9470120 tgtt 9470117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 25238289 - 25238411
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacata-aagtaatgagata 243  Q
    ||||||||| |||||| |||| |  ||| ||| |||| ||| |||||||||||||||||||||||| ||||||| ||| ||||| | |||| |||||| |    
T  25238289 ctctcttttaaacactttctctagcactcacttttttattggtttaaatcattgtggatctacactttgaaaatagaacccacaaagaagtgatgagaca 25238388  T
Q  244 tacattgattctattcaataaaa 266  Q
    |||||||||| |||  |||||||    
T  25238389 tacattgattttatctaataaaa 25238411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 18511263 - 18511351
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    |||||| |||||| | ||| |||| ||||||||||| ||||||||| || || || ||||||||||| ||| |||||||||||||||||    
T  18511263 tttaaaacattgtaggtcttcactttgaaaattgaacccacataaaatagtgggacatacattgattttatccaataaaagagtgagtg 18511351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 26767776 - 26767903
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatataca 247  Q
    ||||||||||||| | || |||||| |||||||| ||| ||||||||||||||  |||||| | ||||||||||| || || |||||  || || |||||    
T  26767776 tcttttgaacactctatctaatactcactcttttattggtttaaatcattgtgagtctacaatttgaaaattgaaccctcacaaagtggtgggacataca 26767875  T
Q  248 ttgattctattcaataaaagagtgagtg 275  Q
    ||||||  || || ||||||||| ||||    
T  26767876 ttgatttcatccagtaaaagagtaagtg 26767903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 32701616 - 32701513
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaa 266  Q
    |||||||||| |||| ||| ||||||||||| ||||| |||||  | |||||||||   |||||||||  || |||||||||||||| ||| ||||||||    
T  32701616 aatacttacttttttattggtttaaatcattatggatttacacgttaaaaattgaacatacataaagtggtgggatatacattgattttatccaataaaa 32701517  T
Q  267 gagt 270  Q
    ||||    
T  32701516 gagt 32701513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 35316436 - 35316542
Alignment:
Q  168 atacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaag 267  Q
    ||||| ||||| || ||||||||||||||||||| |||||| | | ||||||||||| ||||||| |  || || ||||||| ||| |||  ||||||||    
T  35316436 atactcactctcttattgatttaaatcattgtgggtctacaatttaaaaattgaatcaacataaaatggtgggacatacattaattttatctaataaaag 35316535  T
Q  268 agtgagt 274  Q
    |||||||    
T  35316536 agtgagt 35316542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 3804731 - 3804620
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgag-atatacattgattctattcaataaa 265  Q
    |||||||||| |||| || |||||||| ||||||| | |||||| |||||||| || | ||||||||| ||| | | |||||||||||  || |||||||    
T  3804731 aatacttactattttattaatttaaattattgtgggtgtacactttgaaaattaaacctacataaagtgatggggacatacattgatttcatccaataaa 3804632  T
Q  266 agagtgagtgtt 277  Q
    ||||||| ||||    
T  3804631 agagtgaatgtt 3804620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 6980132 - 6980262
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| || ||  || |||||||||||| |||| ||| |||||||||||  |||| |||||  |   | ||    
T  6980132 ctctcttttgaacactttctctaatactcactctcttattagttgaaatcattgtgggtctatactttgaaaattgaactcacacaaagtggtagaacat 6980231  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    || ||||||  || |||||||||||||||||    
T  6980232 accttgatttcatccaataaaagagtgagtg 6980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 36471867 - 36471981
Alignment:
Q  162 tctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaa 261  Q
    |||| |||||| |||||||| ||| ||||||||||||||  | |||| | ||||||||||||||| | |||||  ||||| |||| ||||||  || |||    
T  36471867 tctctaatactcactcttttattggtttaaatcattgtgagtttacattttgaaaattgaatccataaaaagtggtgagacatactttgatttcatccaa 36471966  T
Q  262 taaaagagtgagtgt 276  Q
    ||| ||| |||||||    
T  36471967 taagagattgagtgt 36471981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 17188200 - 17188103
Alignment:
Q  178 ttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    |||| ||| ||||||||||| |||  ||||||| |||||||||| | |||| |||||  ||||||| |||||||||  || |||||||| ||||||||    
T  17188200 ttttattggtttaaatcattctgggcctacactttgaaaattgagttcacacaaagtggtgagatacacattgatttcatccaataaaatagtgagtg 17188103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 40947299 - 40947343
Alignment:
Q  261 ataaaagagtgagtgttgaaaagtgagtgttgctaacattcatct 305  Q
    |||||||||||||||||||||||||  |||||||| |||||||||    
T  40947299 ataaaagagtgagtgttgaaaagtggatgttgctagcattcatct 40947343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 14489551 - 14489626
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattg 220  Q
    |||||||||||| | | |||| |||||| | |||||| ||| ||||||| |||||||||||||||| | |||||||    
T  14489551 ctctcttttgaaaattttctctaatactcattcttttattggtttaaattattgtggatctacactttaaaaattg 14489626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 34142180 - 34142283
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| |||||| |||||||  |||||||| ||||||||||| ||||| |||||| ||||| ||||||  |||  || |||||||| |||||     
T  34142180 actctcttattggtttaaaccattgtgactctacactttgaaaattgaacccacacaaagtagtgagacatacatgaatttcatccaataaaaaagtgaa 34142279  T
Q  274 tgtt 277  Q
    ||||    
T  34142280 tgtt 34142283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 45554727 - 45554652
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattg 220  Q
    |||||||||||||| | |||| |||||| ||| | || ||| ||||||||||||||| ||||||||  ||||||||    
T  45554727 ctctcttttgaacattctctctaatactcactttcttattggtttaaatcattgtgggtctacacttggaaaattg 45554652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 13341709 - 13341771
Alignment:
Q  215 aaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||||||||||| | ||||||||||||  ||||  ||||||||||||| ||| ||||    
T  13341709 aaattgaatccacataaaatgatgagatatacaccgatttcattcaataaaagaatgaatgtt 13341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 472178 - 472271
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgaga 241  Q
    |||||||| |||| |||  ||||||  |||| || ||| ||||||||||||||||| || | | |||||||||||  |||| ||||||||||||    
T  472178 tcttttgagcactctctttaatactcgctctcttattggtttaaatcattgtggatatatattttgaaaattgaactcacacaaagtaatgaga 472271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 11539593 - 11539461
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatca-ttgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||  ||||| |||| |||||| ||||| || ||| ||||||||| || |||||||||||| ||||||| |||  |||| ||||| |||  | ||    
T  11539593 tctcttttacacactctctctaatactcactctcttattggtttaaatcaattctggatctacactttgaaaatagaactcacacaaagtgatggaacat 11539494  T
Q  245 acat--tgattctattcaataaaagagtgagtg 275  Q
    ||||  |||||  || |||||||||||||||||    
T  11539493 acatattgatttcatccaataaaagagtgagtg 11539461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 11729753 - 11729786
Alignment:
Q  271 gagtgttgaaaagtgagtgttgctaacattcatc 304  Q
    ||||||||||||||||||||||||||| ||||||    
T  11729753 gagtgttgaaaagtgagtgttgctaactttcatc 11729786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 15884597 - 15884508
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagt 234  Q
    ||||||||||| ||| ||||| |||||| | | | || ||| ||||||| ||||||| |||||| | ||||||||||| ||||| |||||    
T  15884597 ctctcttttgaccacaatctctaatactcattatcttattggtttaaataattgtgggtctacattttgaaaattgaacccacacaaagt 15884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 42579748 - 42579801
Alignment:
Q  224 ccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    |||| |||||| |||||||||| |||||||  || |||||||||||||||||||    
T  42579748 ccacgtaaagtgatgagatatatattgatttcatccaataaaagagtgagtgtt 42579801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 30718340 - 30718467
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||  ||||| |||| |||| | ||| |||| ||| ||||||||||||||  |||||||| |||||||  |||||||| ||| | ||| || |||    
T  30718340 tctcttttagacactctctctaatattcacttttttattggtttaaatcattgtgagtctacactttgaaaatacaatccacacaaaatgatg-gacata 30718438  T
Q  246 cattgattctattcaataaaagagtgagt 274  Q
     || ||||  || ||||||||||||||||    
T  30718439 tatcgatttcatccaataaaagagtgagt 30718467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 34905504 - 34905372
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||  |||| |||||| ||||| || ||| ||||||||||||||| |||||||| ||||||||||| ||| | |||||  || || ||    
T  34905504 ctctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacat 34905405  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||  || |||||||||||||||||||    
T  34905404 acattgatttcatccaataaaagagtgagtgtt 34905372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 10133170 - 10133302
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||| |||  ||  |||||| |||||||| ||| ||||||||||||||| |||||||| ||||||||||| || ||||||||  || || ||    
T  10133170 ctctcttttgaatactcactttaatactcactcttttattggtttaaatcattgtggttctacactttgaaaattgaacccccataaagtggtgggacat 10133269  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    ||| | |||  || ||||||| |||||||||||    
T  10133270 acaataatttcatccaataaatgagtgagtgtt 10133302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 21987458 - 21987330
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||||||||||| |||| |||||| ||| | || ||| |||||||||||| ||||||||||| || |||| |||  | ||||||||  || |||||||    
T  21987458 ctcttttgaacactctctctaatactcactttcttattggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtggtgggatatac 21987359  T
Q  247 attgattctattcaataaaagagtgagtg 275  Q
    |||||||  || |||||||| ||||||||    
T  21987358 attgatttcatccaataaaatagtgagtg 21987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 12780813 - 12780880
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||||||||||||||||||||| ||||||||||| | ||| |||||| ||||| ||||||||||||    
T  12780813 tttaaatcattgtggatctacactttgaaaattgaaccaacacaaagtagtgagacatacattgattc 12780880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 5106464 - 5106334
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||||||||||  |||| |||| | ||||| || ||| |||||||| |||||| | |||||| ||||||||||  ||||| |||||  || || ||||    
T  5106464 ctcttttgaacacactctctaatattcactctattattggtttaaatccttgtgggtgtacactttgaaaattgatcccacacaaagtggtgggacatac 5106365  T
Q  247 attgattctattcaataaaagagtgagtgtt 277  Q
    ||||||| ||| |||||||| ||||||||||    
T  5106364 attgattttatccaataaaaaagtgagtgtt 5106334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 32112729 - 32112802
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaat 218  Q
    |||||||||||||| | |||| |||| | ||||| || ||| |||||||||||||||||||||||| |||||||    
T  32112729 ctctcttttgaacattctctctaatattcactctcttattgttttaaatcattgtggatctacactttgaaaat 32112802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 445976 - 445856
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| |||||| | ||| || ||| ||||||||||||||  |||| ||| ||||||||||| ||||| |||||  || || |||||||||||     
T  445976 aacactctctctaatactcattctcttattggtttaaatcattgtgactctagactttgaaaattgaacccacacaaagtggtgtgacatacattgattt 445877  T
Q  255 tattcaataaaagagtgagtg 275  Q
     || |||||||| ||||||||    
T  445876 catccaataaaaaagtgagtg 445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 12784993 - 12785077
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtg 271  Q
    ||||||||||| |||||||||||| |||||||||||   |||||||||| | ||| |||||||||||| |  |||||||| ||||    
T  12784993 tttaaatcattatggatctacactttgaaaattgaactaacataaagtagtaagacatacattgattccacccaataaaaaagtg 12785077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 32598961 - 32599086
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    |||||||| |||| | |||  |||||| |||||||| |||||||||||||||||| ||||||||| || |||| | | ||||| |||||   | || |||    
T  32598961 tctcttttaaacattctctttaatactcactcttttattgatttaaatcattgtgaatctacactttggaaatagcacccacacaaagtggcgggacata 32599060  T
Q  246 cattgattctattcaataaaagagtg 271  Q
    |||  |||| || |||||||||||||    
T  32599061 catgtattccatccaataaaagagtg 32599086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 282
Target Start/End: Complemental strand, 2676053 - 2675926
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| |||||| ||| |||| ||| |||||| |||||||| |||||| | |||||||| || | | | |||||  || || ||||||||| |     
T  2676053 aacactctctctaatactcacttttttattggtttaaaccattgtgggtctacattttgaaaattaaacctaaacaaagtggtgggacatacattgaatt 2675954  T
Q  255 tattcaataaaagagtgagtgttgaaaa 282  Q
     ||||||||||||||||| |||| ||||    
T  2675953 cattcaataaaagagtgaatgttaaaaa 2675926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 31116146 - 31116268
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| |||||| ||||| || ||| ||||||||||||||| | |||||  || |||| |||  |||| |||||| || || |||||||||||     
T  31116146 aacactctctctaatactcactctcttattggtttaaatcattgtgggtttacacattggaaatagaacacacacaaagtagtgggacatacattgattt 31116245  T
Q  255 tattcaataaaagagtgagtgtt 277  Q
     || ||||| |||||||| ||||    
T  31116246 catccaatagaagagtgaatgtt 31116268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 1392795 - 1392675
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||  | || |||||| ||||| || ||| |||||||||||||||  ||||| | | |||||||||  || | |||||| ||||| ||    
T  1392795 ctctcttttgaacaccctatctaatactcactctcttattggtttaaatcattgtgg-gctacattttaaaaattgaacacatacaaagtagtgagacat 1392697  T
Q  245 acattgattctattcaataaaa 266  Q
    |||||||||  || ||||||||    
T  1392696 acattgatttcatccaataaaa 1392675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 16851985 - 16852062
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||||||||   || | |||||  ||||| || ||| ||||||||||||||| |||||||| |||||||||||    
T  16851985 ctctcttttgaacatcctccctaatacccactctcttattggtttaaatcattgtgggtctacactttgaaaattgaa 16852062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 34882282 - 34882241
Alignment:
Q  259 caataaaagagtgagtgttgaaaagtgagtgttgctaacatt 300  Q
    |||||| |||||||||||||||||| ||||||||||| ||||    
T  34882282 caataagagagtgagtgttgaaaagagagtgttgctagcatt 34882241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 6992337 - 6992281
Alignment:
Q  244 tacattgattctattcaataaaagagtgagtgttgaaaagtgagtgttgctaacatt 300  Q
    |||||||||| || ||||||||||| |||||| | ||||| ||||||||||| ||||    
T  6992337 tacattgattttactcaataaaagaatgagtgcttaaaagagagtgttgctagcatt 6992281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 8441866 - 8441938
Alignment:
Q  150 ttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||||| |||| |||||| |||||||| ||| |||| || ||||  | |||||||| |||||||||||    
T  8441866 ttttgaacactctctctaatactcactcttttattggtttagattattgaaggtctacactttgaaaattgaa 8441938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 8450670 - 8450742
Alignment:
Q  150 ttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||||| |||| |||||| |||||||| ||| |||| || ||||  | |||||||| |||||||||||    
T  8450670 ttttgaacactctctctaatactcactcttttattggtttagattattgaaggtctacactttgaaaattgaa 8450742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 17144705 - 17144757
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaatt 219  Q
    ||||||||||| ||| ||  ||||||||||||||| |||||||| ||||||||    
T  17144705 aatacttactcctttattagtttaaatcattgtgggtctacactttgaaaatt 17144757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 35128794 - 35128862
Alignment:
Q  204 ctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtga 272  Q
    ||||||| ||||||| ||| |||||||||||  || || ||||||||||| ||  ||||||||||||||    
T  35128794 ctacactttgaaaatggaacccacataaagtggtgggacatacattgattttacccaataaaagagtga 35128862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 44350814 - 44350940
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||  |||||||| ||||||||||| | | | ||||| | |||| ||    
T  44350814 ctctcttttgaacaccatctctaatactcactcttttgttggtttaaatcattgtgagtctacactttgaaaattgaacctaaacaaagtgacgagacat 44350913  T
Q  245 acattgattctattcaataaaagagtg 271  Q
    |||||||||  || |||||||| ||||    
T  44350914 acattgatttgatccaataaaaaagtg 44350940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 22190107 - 22189977
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||  |||| |||||| |||| ||| ||| |||||||||||| || |||||||| ||||||||||| ||||| |||||  || |  ||    
T  22190107 ctctcttttgaacaccctctctaatactcactcgtttattggtttaaatcattgcgggtctacactttgaaaattgaacccacacaaagtggtgggccat 22190008  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||||||||||||    
T  22190007 acattgatttcatccaataaaagagtgagtg 22189977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 6442330 - 6442253
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatcc 225  Q
    |||||||||||||||||  |||||| |||||||| ||| ||||||||||||||| |||||||| ||||||||||||||    
T  6442330 tcttttgaacactatctttaatactcactcttttattggtttaaatcattgtgggtctacactttgaaaattgaatcc 6442253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 39254250 - 39254121
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||||| |||  || ||| ||||| || ||||||||||| ||||||| |||||| | | ||||||||| | ||| |||||  ||| | |||    
T  39254250 tctcttttgaacactctctttaacactcactctcttattgatttaaattattgtgggtctacattttaaaaattgaaccaacacaaagtggtgaaacata 39254151  T
Q  246 cattgattctattcaataaaagagtgagtg 275  Q
    |||| ||| |||||||||||||||||||||    
T  39254150 cattaattttattcaataaaagagtgagtg 39254121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 27888450 - 27888318
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||| |||| |||| || ||| ||||| || ||| ||||||||||||||| |||||||| | ||||||||| ||||| |||||  || || ||    
T  27888450 ctctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacat 27888351  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    ||||||||| ||| |||| | || |||||||||    
T  27888350 acattgattttatccaatgagagggtgagtgtt 27888318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 11824237 - 11824109
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||  |||||| ||| | || ||||||||||||||||||| | |||||| ||||||||||| | ||| ||| |  || || ||    
T  11824237 ctctcttttgaacactctct--aatactcactttcttattgatttaaatcattgtgggtttacactttgaaaattgaagctacacaaaatggtgggacat 11824140  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||||||||||||    
T  11824139 acattgatttcatccaataaaagagtgagtg 11824109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 19422850 - 19422911
Alignment:
Q  149 cttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacact 210  Q
    |||||||||||||||||  ||||| |||||||| ||| ||||||||||||||||||||||||    
T  19422850 cttttgaacactatctctgatactcactcttttattggtttaaatcattgtggatctacact 19422911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 12263458 - 12263574
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| |||||| ||| | || ||| ||||||||||||||| |||||||| ||||||||||  | ||| ||||| ||| || ||||||||||||    
T  12263458 aacactctctctaatactcactatcttattggtttaaatcattgtgggtctacactttgaaaattgatcctacacaaagtgatgggacatacattgattc 12263557  T
Q  255 tattcaataaaagagtg 271  Q
     || | |||||||||||    
T  12263558 catccgataaaagagtg 12263574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 32605458 - 32605391
Alignment:
Q  186 atttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgatt 253  Q
    |||||||||||||||   ||||||| | ||||||||||||||| |||||||||||| |||||||||||    
T  32605458 atttaaatcattgtgagcctacactttaaaaattgaatccacacaaagtaatgagacatacattgatt 32605391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 6580014 - 6580120
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| || ||| ||||||| ||||||| || | | | ||||||||||| | ||| |||||| ||||| ||    
T  6580014 ctctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtccatattttgaaaattgaacctacacaaagtagtgagacat 6580113  T
Q  245 acattga 251  Q
    |||||||    
T  6580114 acattga 6580120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 46517459 - 46517329
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||||||   |||| |||||| | ||| || ||| ||||||||||||||  |||||||| ||||||||||| || || | | |  || |||||    
T  46517459 ctctcttttgaacagcctctctaatactcattctcttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacagaatggtgggatat 46517360  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    ||||||||| ||| ||||||| |||||||||    
T  46517359 acattgattttatccaataaatgagtgagtg 46517329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 27949441 - 27949364
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||||||||| |||| |||||| ||||| || ||  ||||||||||||||| |||||||| ||||| |||||    
T  27949441 ctctcttttgaacactctctctaatactcactctcttattagtttaaatcattgtgggtctacactttgaaatttgaa 27949364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 48374451 - 48374580
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| |||||| ||||||| ||||||  | |||||| || |||| ||| ||| | |||||  || || ||    
T  48374451 ctctcttttgaacactctctctaatactcactctcttgttggtttaaattattgtgagtatacactttggaaatagaacccatagaaagtggtgggacat 48374550  T
Q  245 acattgattctattcaataaaagagtgagt 274  Q
     |||  |||| |||||||||||||||||||    
T  48374551 gcatgaattccattcaataaaagagtgagt 48374580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 7459489 - 7459382
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaa 266  Q
    |||||| |||||||| ||| ||||||| |||||||||||| | | ||||||||||   ||||||||||  ||  ||||||||||||| |||  |||||||    
T  7459489 aatactcactcttttattggtttaaattattgtggatctatattttgaaaattgagctcacataaagtggtggaatatacattgattttatcgaataaaa 7459390  T
Q  267 gagtgagt 274  Q
    || |||||    
T  7459389 gaatgagt 7459382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 29462092 - 29462154
Alignment:
Q  223 tccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtg 285  Q
    ||||| ||||||| ||||  ||||||||||| |||||||||||||| ||||||||||| ||||    
T  29462092 tccacttaaagtagtgagtcatacattgattttattcaataaaagaatgagtgttgaagagtg 29462154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 36845576 - 36845661
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||||||||||||| |||| ||| ||||||||||| ||||| ||| |  ||||| ||| |||||||  ||||||||||||||||||    
T  36845576 tttaaatcattgtgggtctatactttgaaaattgaacccacacaaattggtgaga-atatattgatttcattcaataaaagagtgag 36845661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 280
Target Start/End: Complemental strand, 2911927 - 2911794
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatct-acactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||| |||||| |||| |||||| ||| |||| |||  ||||||||| |||||||| ||||| |  |||| |  ||||| |||||| |||||  ||||    
T  2911927 tcttttcaacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttccacttaaagtgatgagtcatac 2911828  T
Q  247 attgattctattcaataaaagagtgagtgttgaa 280  Q
    ||| ||| |||||||||| ||| |||||||||||    
T  2911827 attaattatattcaataagagaatgagtgttgaa 2911794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 7775166 - 7775038
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||||| |||| |||| | ||||  || ||  ||||||||||| ||| || ||||| |||||||||||  |||| |||||  || || |||    
T  7775166 tctcttttgaacactctctctaatattcactcacttatttgtttaaatcattctgg-tccacactttgaaaattgaactcacacaaagtggtgggacata 7775068  T
Q  246 cattgattctattcaataaaagagtgagtg 275  Q
    ||||||||  || |||||||||||||||||    
T  7775067 cattgatttcatccaataaaagagtgagtg 7775038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 33008242 - 33008142
Alignment:
Q  175 ctcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagt 274  Q
    ||||||| ||| ||||||||||||||| |||||||  || |||| ||| ||||| |||||  || || ||||| |||||  || ||||||||||||||||    
T  33008242 ctcttttattggtttaaatcattgtgggtctacacattggaaatagaacccacacaaagtggtgggacatacaatgatttcatccaataaaagagtgagt 33008143  T
Q  275 g 275  Q
    |    
T  33008142 g 33008142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 19422979 - 19423014
Alignment:
Q  266 agagtgagtgttgaaaagtgagtgttgctaacattc 301  Q
    |||| |||||||||||||||||||||||||||||||    
T  19422979 agagagagtgttgaaaagtgagtgttgctaacattc 19423014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 31502505 - 31502608
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| ||||||||||||||  |||||||| |||||||||||  |||| ||| |  || || |||| ||||||  || |||||||||||||||    
T  31502505 actctcttattggtttaaatcattgtgagtctacactttgaaaattgaacgcacacaaaatggtgggacataccttgatttcatccaataaaagagtgag 31502604  T
Q  274 tgtt 277  Q
    ||||    
T  31502605 tgtt 31502608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 44510999 - 44511078
Alignment:
Q  196 ttgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||||||||||  |||||||||||  || | ||||| |||||| |||||||||||  || |||||||| ||||||||    
T  44510999 ttgtggatctacacattgaaaattgaacacagacaaagtgatgagacatacattgatttcatccaataaaaaagtgagtg 44511078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 19494406 - 19494480
Alignment:
Q  200 ggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagt 274  Q
    ||||||||||| ||||||| ||| |||||||||||  || || |||||||||||  |  ||||||||||||||||    
T  19494406 ggatctacactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagt 19494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 27320294 - 27320260
Alignment:
Q  244 tacattgattctattcaataaaagagtgagtgttg 278  Q
    |||||||||| ||||||||||||||||||||||||    
T  27320294 tacattgattttattcaataaaagagtgagtgttg 27320260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 7775009 - 7774956
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtgg 201  Q
    ||||||||||||| |||| |||| ||||||| || ||| |||||||||||||||    
T  7775009 tcttttgaacactctctctaatatttactctcttattggtttaaatcattgtgg 7774956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 272
Target Start/End: Complemental strand, 14795297 - 14795172
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||||||||||| ||||  ||||| ||||| || ||  ||||||||||| ||||| |||||| | ||||||||| | ||| ||| |  || || ||||    
T  14795297 ctcttttgaacactctctcttatactcactctcttattagtttaaatcattatggatatacactttaaaaattgaaccaacaaaaattggtgggacatac 14795198  T
Q  247 attgattctattcaataaaagagtga 272  Q
    |||||||  || |||||||| |||||    
T  14795197 attgatttcatccaataaaaaagtga 14795172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 272
Target Start/End: Complemental strand, 15242289 - 15242164
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||||||||||| ||||  ||||| ||||| || ||  ||||||||||| ||||| |||||| | ||||||||| | ||| ||| |  || || ||||    
T  15242289 ctcttttgaacactctctcttatactcactctcttattagtttaaatcattatggatatacactttaaaaattgaaccaacaaaaattggtgggacatac 15242190  T
Q  247 attgattctattcaataaaagagtga 272  Q
    |||||||  || |||||||| |||||    
T  15242189 attgatttcatccaataaaaaagtga 15242164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 19840956 - 19841053
Alignment:
Q  204 ctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtgagtgttgctaacattc 301  Q
    ||||||| || |||| ||| |||||||||||  | ||| |||||||||||  |  |||||||||||||| || | ||||| ||||||||||| |||||    
T  19840956 ctacactttggaaatggaacccacataaagtggtaagacatacattgatttcaaccaataaaagagtgaatgctaaaaagagagtgttgctagcattc 19841053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 24539134 - 24539267
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatc-tacactatgaaaattgaatccacataaagtaatgagata 243  Q
    |||||||||| ||||| |||| || ||| ||||| |  |||  |||||||| ||||| || |||| | || |||| ||||||| |||||||  || || |    
T  24539134 ctctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcatacattttggaaatggaatccatataaagtggtgggaca 24539233  T
Q  244 tacattgattctattcaataaaagagtgagtgtt 277  Q
    || ||||||| ||| |||||||||||||||||||    
T  24539234 tatattgattttatccaataaaagagtgagtgtt 24539267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 25686847 - 25686924
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||||||| | | || |||||| | | | || ||| ||||||||||||||| |||||||| |||||||||||    
T  25686847 ctctcttttgaacattctttctaatactcattatcttattggtttaaatcattgtgggtctacactttgaaaattgaa 25686924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 41508359 - 41508427
Alignment:
Q  217 attgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtg 285  Q
    |||||| ||| |||||||| ||| |||||||||||||  || |||||||| |||||||| | |||||||    
T  41508359 attgaacccatataaagtagtgaaatatacattgatttcatccaataaaaaagtgagtgctaaaaagtg 41508427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 20454705 - 20454578
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||||| |||| || ||| ||||| || |||||||||||||||||||||||||||| ||||||||||| | ||| |||||  || || |||    
T  20454705 tctcttttgaacactctctctaacactcactctgttattgatttaaatcattgtggatctacactttgaaaattgaaccaacacaaagt-gtg-gacata 20454608  T
Q  246 cattgattctattcaataaaagagtgagtg 275  Q
    |||||||| |||  ||||||||||||||||    
T  20454607 cattgattttatctaataaaagagtgagtg 20454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 38636467 - 38636347
Alignment:
Q  183 ttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaa 282  Q
    ||||| |||||||||||||||||||||| | ||||||  | |||||||||||| ||||| ||||||||||| |||  |||||||||||||||| || | |    
T  38636467 ttgatataaatcattgtggatctacactttaaaaattagacccacataaagtagtgagacatacattgattttatcaaataaaagagtgagtggtggaga 38636368  T
Q  283 gt--gagtgttgctaacattc 301  Q
    ||  ||| |||||||||||||    
T  38636367 gtgcgagcgttgctaacattc 38636347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 43771294 - 43771165
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||  |||  |||||| ||||| || ||| ||||||||||||||| |||||||| ||||||||||| ||||| | |||  || || ||    
T  43771294 ctctcttttgaacaccctctttaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccacacagagtggtgggacat 43771195  T
Q  245 acattgattctattcaataaaagagtgagt 274  Q
    |||||||||  || ||||||||||||||||    
T  43771194 acattgatttcatccaataaaagagtgagt 43771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 24938430 - 24938558
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatataca 247  Q
    |||||| |||||| |||| |||||||||||| || ||| ||||||||||||| | |||||||| | ||||||||||||| | ||| |  || || |||||    
T  24938430 tcttttcaacactttctctaatacttactctcttattggtttaaatcattgtaggtctacactttaaaaattgaatccaaacaaaatggtgggacataca 24938529  T
Q  248 ttgattctattcaataaaagagtgagtgt 276  Q
    ||||||  || ||||||||||||||||||    
T  24938530 ttgattacatccaataaaagagtgagtgt 24938558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 8109124 - 8108994
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||| | || ||| ||||||||||||||| |||||||| |||||||||||   ||| ||| || || || ||    
T  8109124 ctctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattgaacaaacacaaattagtgggacat 8109025  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  |  |||||||||||||||||    
T  8109024 acattgatttcacccaataaaagagtgagtg 8108994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 47009356 - 47009227
Alignment:
Q  146 tctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatata 245  Q
    ||||||||||||||  |||| |||||| ||| | || ||| |||||||||||||| ||||||||| |||||||||||  |||| ||||   ||||| | |    
T  47009356 tctcttttgaacaccctctctaatactcactttcttattggtttaaatcattgtgtatctacactttgaaaattgaactcacacaaagcggtgagacaaa 47009257  T
Q  246 cattgattctattcaataaaagagtgagtg 275  Q
    |||| ||| ||| |||||||||||||||||    
T  47009256 cattaattttatccaataaaagagtgagtg 47009227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 301
Target Start/End: Original strand, 26361320 - 26361480
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||  |||| |||||| ||||  || ||| ||||||||||| ||| |||||||| |||| |||||| ||||| ||| |  || |  ||    
T  26361320 ctctcttttgaacaccctctctaatactcactcacttattggtttaaatcattatgggtctacactttgaatattgaacccacacaaaatggtgggtcat 26361419  T
Q  245 acattgattctattcaataaaagagt----gagtgttgaaaagtgagtgttgctaacattc 301  Q
    ||||||| |  || ||||||||||||    ||||||||||||||||||||||||| |||||    
T  26361420 acattgacttcatccaataaaagagtgttagagtgttgaaaagtgagtgttgctagcattc 26361480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 34129412 - 34129542
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||| ||||||| ||||| |||||| |||||||| ||| |||||| |||||||  || ||||| |||||||||||  |||| |||||  || |||||    
T  34129412 ctctcttctgaacacaatctctaatactcactcttttattggtttaaaccattgtgagtccacactttgaaaattgaacacacacaaagtggtgggatat 34129511  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    ||||||||   || ||||| |||||||||||    
T  34129512 acattgatctcatccaatagaagagtgagtg 34129542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 722322 - 722195
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatataca 247  Q
    ||||||||||||| |||| |||||| ||||| || ||| ||||||||||||||| |||||||| | |||||||||   ||| |||||  || || ||||     
T  722322 tcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaattgaacttacacaaagtggtgggacatact 722223  T
Q  248 ttgattctattcaataaaagagtgagtg 275  Q
    ||||||  || |||||||| ||||||||    
T  722222 ttgatttcatccaataaaaaagtgagtg 722195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 50164560 - 50164433
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatataca 247  Q
    ||||||||||||| |||| ||| || ||| | || ||| ||||||||||||||  |||||||| ||||||||||| || || ||| |  || || |||||    
T  50164560 tcttttgaacactctctctaatgctcactttcttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaaatggtgggagataca 50164461  T
Q  248 ttgattctattcaataaaagagtgagtg 275  Q
    |||||| ||| ||||||| |||||||||    
T  50164460 ttgattttatccaataaatgagtgagtg 50164433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 754595 - 754669
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||||||| |||| |||||| ||||| || ||| ||||||||||||||| |||||||| | |||||||||    
T  754595 tcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaattgaa 754669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 24834746 - 24834625
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| ||| || |||| |||| | ||||| || ||| ||||||| ||||||| |||||||| ||||||||||| ||||| ||| |  || || ||    
T  24834746 ctctcttttaaactctctctctaatagtcactctcttattggtttaaattattgtgggtctacactttgaaaattgaacccacacaaaatggtgggacat 24834647  T
Q  245 acattgattctattcaataaaa 266  Q
    |||||||||| || ||||||||    
T  24834646 acattgattccatccaataaaa 24834625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 37451025 - 37451155
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||||  |||| |||||| |||||||| ||| |||||||||||| |  |||||||| ||||||| |||  | || ||| |  | |||| |    
T  37451025 ctctcttttaaacaccttctctaatactcactcttttattggtttaaatcattgcgagtctacactttgaaaatagaa--ctcacaaattggtaagatgt 37451122  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    |||| |||||||| |||||||||||||||||||    
T  37451123 acatggattctatccaataaaagagtgagtgtt 37451155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 39471325 - 39471200
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||| | |||| |||||| ||||| || ||| ||||||||||||||| |||||||| |||| |||||| | ||| |||||  || || ||    
T  39471325 ctctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaagattgaaccaacacaaagtggtgggacat 39471226  T
Q  245 acattgattctattcaataaaagagt 270  Q
    |||||||||  ||  |||||||||||    
T  39471225 acattgatttcatctaataaaagagt 39471200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 31250916 - 31250972
Alignment:
Q  166 aaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||| |||||||||| ||||||||||||||||||| |||||| | |||||||||||    
T  31250916 aaatatttactcttttattgatttaaatcattgtgggtctacattttgaaaattgaa 31250972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 49682836 - 49682911
Alignment:
Q  178 ttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgatt 253  Q
    |||| ||| ||||||||  ||||| |||||||| |||||||||||| || |||||||  |||||||||||||||||    
T  49682836 ttttattggtttaaatcgatgtggctctacactttgaaaattgaattcaaataaagtggtgagatatacattgatt 49682911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 50652386 - 50652480
Alignment:
Q  183 ttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttg 278  Q
    ||||||||||| |||||   |||||| | ||||||||||| | ||| |||||  ||||||||||||||||| ||| ||||||||| ||||||||||    
T  50652386 ttgatttaaattattgtacgtctacattttgaaaattgaacctacacaaagtggtgagatatacattgattttatgcaataaaag-gtgagtgttg 50652480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 2088732 - 2088809
Alignment:
Q  200 ggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    ||||||||||| || |||| |||||||||||||||  || || |||||||||||  | ||||| ||||||||||||||    
T  2088732 ggatctacactttggaaatggaatccacataaagtggtgggacatacattgatttcactcaattaaagagtgagtgtt 2088809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 40991606 - 40991666
Alignment:
Q  150 ttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacact 210  Q
    ||||||||||| ||||  ||||| |||||||| ||| ||||||||||||||| ||||||||    
T  40991606 ttttgaacactctctctgatactcactcttttattggtttaaatcattgtgggtctacact 40991666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 272
Target Start/End: Complemental strand, 43958316 - 43958192
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| ||||   |||||||||| || ||| ||||||||| | ||  ||| ||   ||||||| || |||||||||| |  || || ||    
T  43958316 ctctcttttgaacactctctct--tacttactctcttattggtttaaatcactttgattctgcatattgaaaataga-tccacataaaatggtgggacat 43958220  T
Q  245 acattgattctattcaataaaagagtga 272  Q
    ||||||||||||||||||||||||||||    
T  43958219 acattgattctattcaataaaagagtga 43958192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 45310977 - 45311049
Alignment:
Q  162 tctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagt 234  Q
    |||| |||||||||||| || |||||||||||||||||   ||| |||| |||||||||||||| || |||||    
T  45310977 tctctaatacttactctcttattgatttaaatcattgtaagtcttcactttgaaaattgaatccccacaaagt 45311049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 49242338 - 49242230
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||||| |||   ||||| | ||| || ||| |||||||||||||| ||||||||  ||||||||||| ||||| ||||| ||| || ||    
T  49242338 ctctcttttaaacactctctatgatactcattctcttattggtttaaatcattgtgaatctacacattgaaaattgaacccacacaaagtgatgggacat 49242239  T
Q  245 acattgatt 253  Q
    | |||||||    
T  49242238 atattgatt 49242230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 13070109 - 13069979
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgt-ggatctacactatgaaaattgaatccacataaagtaatgagata 243  Q
    |||||||||||||| | |||| || ||| |||||||| |||| | |||||| ||| ||| ||||||| ||||||| ||| |||||||||||  ||  | |    
T  13070109 ctctcttttgaacattttctctaacactcactcttttattgagtaaaatcaatgtaggacctacactttgaaaatggaacccacataaagtggtggaaca 13070010  T
Q  244 tacattgattctattcaataaaagagtgagtg 275  Q
    |||||||||| |   |||||||||||||||||    
T  13070009 tacattgatt-tcaccaataaaagagtgagtg 13069979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 2860995 - 2860957
Alignment:
Q  195 attgtggatctacactatgaaaattgaatccacataaag 233  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  2860995 attgtggatctacactttgaaaattgaatccacagaaag 2860957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 38537528 - 38537590
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacact 210  Q
    ||||||||||||| |||| |||| | | |||||| ||||||||||||||| || |||||||||    
T  38537528 tcttttgaacactctctctaataatcattcttttattgatttaaatcattatgaatctacact 38537590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 19937184 - 19937257
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaat 218  Q
    ||||||||| |||||| |||  ||| || |||||||||||| ||| ||||||||| |||||| ||| |||||||    
T  19937184 ctctcttttaaacactctctttaattctcactcttttgttggtttgaatcattgtcgatctatactttgaaaat 19937257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 33996014 - 33996079
Alignment:
Q  212 tgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgtt 277  Q
    ||||||||||| ||||| |||||  ||||| |||||||||||  ||| ||||||||||||| ||||    
T  33996014 tgaaaattgaacccacaaaaagtggtgagacatacattgatttgatttaataaaagagtgaatgtt 33996079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 50481586 - 50481687
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| ||||||| ||||||  |||||||| ||||||| ||| ||| | |||||  ||||| |||| ||||||  || |||||||||||||||    
T  50481586 actctcttattggtttaaatgattgtgtgtctacactttgaaaatagaaaccatacaaagtggtgagacatactttgatttcatccaataaaagagtgag 50481685  T
Q  274 tg 275  Q
    ||    
T  50481686 tg 50481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 20225395 - 20225483
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||||||||||  |||||||| || |||| ||| ||||| |||||  || || || ||| ||||| || |||||||||||||||||    
T  20225395 tttaaatcattgtgagtctacactttggaaatagaacccacaaaaagtggtgggacatgcatggattccatccaataaaagagtgagtg 20225483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 48339381 - 48339484
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctatt-caataaaagagtga 272  Q
    |||||||| ||| |||||| |||| ||| ||||| || ||||||||||| ||||| |||||  ||  | ||||||||||| |||| |||||| |||||||    
T  48339381 actcttttattggtttaaagcattatgggtctacgctttgaaaattgaacccacacaaagtggtggaacatacattgatt-tattccaataagagagtga 48339479  T
Q  273 gtgtt 277  Q
    |||||    
T  48339480 gtgtt 48339484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 49077375 - 49077287
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||||||||||| |||||||| | ||||||||| ||||| |||||  || || ||| ||| ||| |||  ||||||||| ||||||    
T  49077375 tttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatatattaattttatctaataaaagaatgagtg 49077287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 1977187 - 1977315
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||||||||||  |||| |||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||| |||||  |  || ||||    
T  1977187 ctcttttgaacacactctctaatactcactcttttattggtttaaatcattgtggatctacactttgaaaattgaacccacacaaagtggttggacatac 1977286  T
Q  247 attgattctattcaataaaagagtgagtg 275  Q
    |||||||  || ||| | |||||||||||    
T  1977287 attgatttcatccaacagaagagtgagtg 1977315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 16983562 - 16983432
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||||| || ||| ||||||||||||||  |||||||| ||||||||||| || || ||||| ||| || ||    
T  16983562 ctctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaagtgatgggacat 16983463  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    | | ||||| ||| |||||||  ||||||||    
T  16983462 aaaatgattttatccaataaatcagtgagtg 16983432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 11962727 - 11962822
Alignment:
Q  178 ttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagt 274  Q
    |||| ||| ||||||||||| |||||||||||| ||||||||||| | ||||||| |  || ||||||| |||||| ||||||||||||||||||||    
T  11962727 ttttattggtttaaatcatt-tggatctacactttgaaaattgaacctacataaaatggtgggatatactttgattttattcaataaaagagtgagt 11962822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 13214613 - 13214503
Alignment:
Q  195 attgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtgagtgttgct 294  Q
    ||||||| |||||||| ||||||||||||| ||| ||| | ||| || ||||||| |||| || |||||||| || || ||||||||| |||||| | ||    
T  13214613 attgtgggtctacactttgaaaattgaatctacacaaaatgatgggacatacattaattccatccaataaaaaagagattgttgaaaaatgagtgctact 13214514  T
Q  295 aacattcatct 305  Q
    |||||||||||    
T  13214513 aacattcatct 13214503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 6098789 - 6098866
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    ||||||||| |||| | |||| |||||| ||||| || ||||||||||| |||||||||||||||| |||||||||||    
T  6098789 ctctcttttaaacattctctctaatactcactctcttattgatttaaattattgtggatctacactttgaaaattgaa 6098866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 8914910 - 8914807
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| ||||||||||||||| |||||||| |||||| |||| ||||| |||||  || || |||||||| || ||| |||| ||||||||||    
T  8914910 actctcttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtgggacatacattggttttatccaatgaaagagtgag 8914811  T
Q  274 tgtt 277  Q
    ||||    
T  8914810 tgtt 8914807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 17499247 - 17499322
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||  ||| |||| |||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||    
T  17499247 ctcttttgacaactctctctaatactcactctcttattggtttaaatcattgtggatctacactttgaaaattgaa 17499322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 36804851 - 36804970
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||| |||| | |||| |||||||||||| || ||||||||||| ||||||||| || | | ||||||||||| ||||| ||| |  || || ||    
T  36804851 ctctcttttcaacattctctctaatacttactctcttattgatttaaattattgtggatgtatattttgaaaattgaacccacacaaaatggtgggacat 36804950  T
Q  245 acattgattctattcaataa 264  Q
    |||||||||| || ||||||    
T  36804951 acattgattccatccaataa 36804970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 45246602 - 45246472
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||| ||| ||||  ||||   |||| || ||||||||||||||||  |||||||||| || |||| |||  | ||||||||  ||||| ||    
T  45246602 ctctcttttgaatactctctcctataccccctctcttattgatttaaatcattgcagatctacactttggaaatagaactcgcataaagtggtgagacat 45246503  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    ||||||||| ||| |||||||| ||||||||    
T  45246502 acattgattttatccaataaaatagtgagtg 45246472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 24055937 - 24056014
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||||||||| |||| || ||| ||||| || ||| ||||||| ||||||| |||||||| |||||||||||    
T  24055937 ctctcttttgaacactttctctaacactcactctcttattggtttaaataattgtgggtctacactttgaaaattgaa 24056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 8903996 - 8903912
Alignment:
Q  169 tacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgatt 253  Q
    |||||||||| || ||| ||||||||||||||| |||||||| ||||||||||| | ||| |||||  || || |||||||||||    
T  8903996 tacttactctcttattggtttaaatcattgtgggtctacactttgaaaattgaaccgacacaaagtggtgggacatacattgatt 8903912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 32072227 - 32072135
Alignment:
Q  183 ttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtg 275  Q
    ||||||||||| ||||||| |||||||| | ||||||||| ||||| |||||  || || ||||||| |||  || |||||||||||||||||    
T  32072227 ttgatttaaataattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattcatttcatccaataaaagagtgagtg 32072135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 9192126 - 9192015
Alignment:
Q  188 ttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtgag 287  Q
    |||||||||||||  |||||| | | ||||||||| ||||| |||||  || |||||||||||||| ||| | || ||||||| ||| ||  ||||||||    
T  9192126 ttaaatcattgtgagtctacaatttaaaaattgaacccacacaaagtggtgggatatacattgattttatccgatgaaagagtaagtatt--aaagtgag 9192029  T
Q  288 tgttgctaacattc 301  Q
    |||||||| |||||    
T  9192028 tgttgctagcattc 9192015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 7493354 - 7493427
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaat 218  Q
    ||||||| |||||||| | || |||||| ||||| || ||| ||||||||||||||  |||||||| |||||||    
T  7493354 ctctcttatgaacactctttctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaat 7493427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 23685295 - 23685169
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| |||    | ||| |||||||||||| | ||||||||| || |||| |||  | ||||||||  || || ||    
T  23685295 ctctcttttgaacactctctctaatactaact----tattggtttaaatcattgcgaatctacactttggaaatagaactcgcataaagtggtgggacat 23685200  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  23685199 acattgatttcatccaataaaatagtgagtg 23685169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 4319778 - 4319866
Alignment:
Q  178 ttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaa 266  Q
    |||| ||||||||||| | ||| | |||||||| |||||||| ||| |||| ||||| |||||| || |||||||| |||  |||||||    
T  4319778 ttttattgatttaaattagtgtaggtctacactttgaaaattaaattcacacaaagtgatgagacatgcattgattttatctaataaaa 4319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 9952775 - 9952899
Alignment:
Q  151 tttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattg 250  Q
    |||||||||| ||| ||||||| | | | || ||| ||||||||||||||| | |||||| |||||||||||  |||| |||||  || || || |||||    
T  9952775 tttgaacactctcttaaatactcattatcttattggtttaaatcattgtgggtttacactttgaaaattgaactcacacaaagtggtgggacatgcattg 9952874  T
Q  251 attctattcaataaaagagtgagtg 275  Q
    |||  || |||||||| | ||||||    
T  9952875 atttcatccaataaaaaaatgagtg 9952899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 28413882 - 28413989
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||||||||  | | |||||| | |||||| ||| ||||||||||| ||| |||| ||| |||||||||||  |||| |||||  || || ||    
T  28413882 ctctcttttgaacactcgc-ctaatactcattcttttattggtttaaatcattatgggtctatactttgaaaattgaactcacacaaagtggtgggacat 28413980  T
Q  245 acattgatt 253  Q
    |||||||||    
T  28413981 acattgatt 28413989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 35819167 - 35819139
Alignment:
Q  272 agtgttgaaaagtgagtgttgctaacatt 300  Q
    |||||||||||||||||||||||||||||    
T  35819167 agtgttgaaaagtgagtgttgctaacatt 35819139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 27978 - 27850
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    |||||||||||||| |||  |||||| ||||| || ||| ||||||||||||||| |||||||| || |||| ||| ||||| |||||  || || ||||    
T  27978 ctcttttgaacactctctttaatactcactctcttattggtttaaatcattgtgggtctacactttggaaatagaacccacacaaagtggtgggacatac 27879  T
Q  247 attgattctattcaataaaagagtgagtg 275  Q
    |||||||| || ||||||||| |||||||    
T  27878 attgattccatccaataaaagcgtgagtg 27850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 30325886 - 30326016
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||| |||||| ||| | || ||| |||||||||||| ||||||||||| || | || |||  | ||||||||  ||||| ||    
T  30325886 ctctcttttgaacactctctctaatactcactttcttattggtttaaatcattgcggatctacactttggagatagaactcgcataaagtggtgagacat 30325985  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  30325986 acattgatttcatccaataaaatagtgagtg 30326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 10141998 - 10142118
Alignment:
Q  155 aacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattc 254  Q
    |||||| |||| || ||| ||||| || ||||||||||| ||||| | |||||||| ||||||| ||| | ||| |||||  || || |||||||||||     
T  10141998 aacactctctctaacactcactctcttattgatttaaataattgttggtctacactttgaaaatggaaccaacacaaagtggtgggacatacattgattt 10142097  T
Q  255 tattcaataaaagagtgagtg 275  Q
    ||| |||||||||||||||||    
T  10142098 tatccaataaaagagtgagtg 10142118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 5413771 - 5413878
Alignment:
Q  167 aatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaa 266  Q
    |||||| ||| |||| ||| ||||||||||| ||| |||||||| || |||||||| ||||| |||||  || || |||||||||||  || ||||||||    
T  5413771 aatactcacttttttattggtttaaatcattatgggtctacactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaataaaa 5413870  T
Q  267 gagtgagt 274  Q
    ||||||||    
T  5413871 gagtgagt 5413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 28490734 - 28490811
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||||||||||| |||| |||||| ||||| || ||| ||||||| ||||||| |||||||| | |||||||||    
T  28490734 ctctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtctacactttcaaaattgaa 28490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 43405532 - 43405431
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||||||||||||||||||| |||||||| || |||| |||   | | |||||  ||||| |||||||||||  ||||||||||||||||||    
T  43405532 actctcttattgatttaaatcattgtgggtctacactttggaaatagaacatatacaaagtggtgagacatacattgatttcattcaataaaagagtgag 43405433  T
Q  274 tg 275  Q
    ||    
T  43405432 tg 43405431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 34368499 - 34368396
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| ||||||||||||||| |||||||| |||||| |||| ||||| |||||  ||  | |||||||| || ||| |||| ||||||||||    
T  34368499 actctcttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtggaacatacattggttttatccaatgaaagagtgag 34368400  T
Q  274 tgtt 277  Q
    ||||    
T  34368399 tgtt 34368396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 41105582 - 41105707
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||| |||| |||| ||||||  |||| || ||| ||||||||| ||||| | | |||| ||||||||||| ||||| |||||| || || ||    
T  41105582 ctctcttttgagcactctctctaatactcgctctcttattggtttaaatcactgtgggtatgcactttgaaaattgaacccacacaaagtagtgggacat 41105681  T
Q  245 acattgattctattcaataaaagagt 270  Q
     | ||||||  || ||||||||||||    
T  41105682 cccttgatttcatccaataaaagagt 41105707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 43541952 - 43541895
Alignment:
Q  212 tgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagag 269  Q
    |||||||||||  |||| ||||| |||||| ||||||||||| |||||||||||||||    
T  43541952 tgaaaattgaactcacacaaagtgatgagacatacattgattttattcaataaaagag 43541895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 28611790 - 28611922
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    ||||||||||| |||| |||| || ||  |||||||| ||||||||||||||||||  |||||||| | ||||| |||  || | ||||| ||| || ||    
T  28611790 ctctcttttgagcactctctctaacaccaactcttttattgatttaaatcattgtgcgtctacactttaaaaatggaactcatacaaagtgatgggacat 28611889  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    ||| || || ||| |||| ||||||||| ||||    
T  28611890 acactggttatatccaatgaaagagtgaatgtt 28611922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 34384703 - 34384835
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||||||| |||  |||||| |||||||| | | | ||||||||||||  |||| | | |||||||||||  |||| ||| || || || ||    
T  34384703 ctctcttttgaacactctctttaatactcactcttttatcggtctaaatcattgtgagtctataatttgaaaattgaactcacacaaaatagtgggacat 34384802  T
Q  245 acattgattctattcaataaaagagtgagtgtt 277  Q
    |||||||||  |  |||||||||| ||||||||    
T  34384803 acattgatttcacccaataaaagaatgagtgtt 34384835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 27592464 - 27592594
Alignment:
Q  145 ctctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatat 244  Q
    |||||||||||| ||| ||||   |||  ||||| || ||| ||||||||||||  |||||||||| || |||| |||  | ||||||||  ||||| ||    
T  27592464 ctctcttttgaatactctctcctgtacccactctcttattggtttaaatcattgcagatctacactttggaaatagaactcgcataaagtggtgagacat 27592563  T
Q  245 acattgattctattcaataaaagagtgagtg 275  Q
    |||||||||  || |||||||| ||||||||    
T  27592564 acattgatttcatccaataaaatagtgagtg 27592594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 28223790 - 28223864
Alignment:
Q  147 ctcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggatctacactatgaaaattga 221  Q
    ||||||||||||   |||| |||||| |||||||| ||| ||||||||||| ||| |||| ||| ||||||||||    
T  28223790 ctcttttgaacatcctctctaatactcactcttttattggtttaaatcattatgggtctatactttgaaaattga 28223864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 32401283 - 32401153
Alignment:
Q  148 tcttttgaacactatctcaaatacttactcttttgttgatttaaatcattgtggat-ctacactatgaaaattgaatccacataaagtaatgagatatac 246  Q
    ||||||||||||| |||| |||||| ||||||| ||||| |||||| | ||||||| ||||  | | ||||| ||| |||||||||||  ||  ||||||    
T  32401283 tcttttgaacactctctctaatactcactctttagttgacttaaattaatgtggatcctacgtttttaaaatggaacccacataaagtggtggaatatac 32401184  T
Q  247 attgattctattcaataaaagagtgagtgtt 277  Q
    ||| |||  | ||||||| ||||| ||||||    
T  32401183 attaatttcactcaataagagagtaagtgtt 32401153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 17537143 - 17537244
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgag 273  Q
    ||||| || ||| ||||||||||| |||||||||||| |||||||| || | ||| ||| |  || || |||||||||||  ||  ||||||||||||||    
T  17537143 actctcttattggtttaaatcattatggatctacactttgaaaattaaaccaacaaaaattggtgggacatacattgatttgatcaaataaaagagtgag 17537242  T
Q  274 tg 275  Q
    ||    
T  17537243 tg 17537244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 28090270 - 28090318
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaa 222  Q
    |||||||| ||| ||||||||||||| |||||| ||| |||||||||||    
T  28090270 actcttttattggtttaaatcattgttgatctaaactttgaaaattgaa 28090318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 41330447 - 41330531
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtg 271  Q
    ||||||||||||||  |||||||| ||||||||||| | ||| ||||| ||| || ||||||| |||  ||  ||||||||||||    
T  41330447 tttaaatcattgtgagtctacactttgaaaattgaacctacacaaagtgatgggacatacattaatttcatctaataaaagagtg 41330531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 9790 - 9678
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtga 286  Q
    ||||||| ||||||  |||||||| | ||||||||| ||||| ||| |  || ||||||||||||||  || |||||||| ||||||||||  | || ||    
T  9790 tttaaattattgtgagtctacacttttaaaattgaacccacacaaaatggtgggatatacattgatttcatccaataaaaaagtgagtgtt--agagaga 9693  T
Q  287 gtgttgctaacattc 301  Q
    ||||||||| |||||    
T  9692 gtgttgctagcattc 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 11336 - 11224
Alignment:
Q  187 tttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctattcaataaaagagtgagtgttgaaaagtga 286  Q
    ||||||| ||||||  |||||||| | ||||||||| ||||| ||| |  || ||||||||||||||  || |||||||| ||||||||||  | || ||    
T  11336 tttaaattattgtgagtctacacttttaaaattgaacccacacaaaatggtgggatatacattgatttcatccaataaaaaagtgagtgtt--agagaga 11239  T
Q  287 gtgttgctaacattc 301  Q
    ||||||||| |||||    
T  11238 gtgttgctagcattc 11224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 26903 - 27006
Alignment:
Q  174 actcttttgttgatttaaatcattgtggatctacactatgaaaattgaatccacataaagtaatgagatatacattgattctatt-caataaaagagtga 272  Q
    |||||||| ||| |||||| |||| ||| ||||| || ||||||||||| ||||| |||||  ||  | ||||||||||| |||| |||||| |||||||    
T  26903 actcttttattggtttaaagcattatgggtctacgctttgaaaattgaacccacacaaagtggtggaacatacattgatt-tattccaataagagagtga 27001  T
Q  273 gtgtt 277  Q
    |||||    
T  27002 gtgtt 27006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University