View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16719_low_2 (Length: 624)
Name: NF16719_low_2
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 614
Target Start/End: Original strand, 30098088 - 30098684
Alignment:
| Q |
18 |
caatcttctaaataattcataaatgtcacatcattgatactctccacagaatgaaatttcctatatagtcacatgataatagaaatcaagagcnnnnnnn |
117 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098088 |
caatcttctaaataattcataaatgccacatcattgatactctccacagaatgaaatttcctatatagtcacatgataatagaaatcaagagcaaaaaaa |
30098187 |
T |
|
| Q |
118 |
ccatttctttgtttacatgcnnnnnnnnnntcaatggaacctaacaatgtgttttcacttcttctcataatttctctttggtttctattaacctttcata |
217 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098188 |
ccatttctttgtttacatgcaaaaaaaaaatcaatggagcctaacaatgtgttttcacttcttctcataatttctctttggtttctattaacctttcata |
30098287 |
T |
|
| Q |
218 |
gcaatgctgagacttccacatatataatccatatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098288 |
gcaatgctgagacttccacatatataatccatatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattc |
30098387 |
T |
|
| Q |
318 |
cttaaaatcaaaaacattagtacctgatgattatgaccaagcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggcttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098388 |
cttaaaatcaaaaacattagtacctgatgattatgaccaagcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggcttt |
30098487 |
T |
|
| Q |
418 |
agtgcagtgttatcttcaaatgagttagagattcttaagaacattgatggctttgttgcagcatatcaagatagaacagctaccattgacacaactcata |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30098488 |
agtgcagtgttatcttcaaatgagttagagattcttaagaacattgatggctttgtttcagcatatcaagatagaactgctaccattgacacaactcata |
30098587 |
T |
|
| Q |
518 |
cctttgaatttctttcactagattctccaaatggactatggtatacttcagattttggagacgatgtcgttgttggtgttattgatactggtctgtg |
614 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30098588 |
cctttgaatttctttcactagattctccaagtggactatggcatacttcagattttggagacgatgtcgttgttggtgttattgatactggtttgtg |
30098684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 148 - 614
Target Start/End: Complemental strand, 30088696 - 30088224
Alignment:
| Q |
148 |
tcaatggaacctaacaatgtgttttcacttcttctcataatttctctttggtttctattaacctttcatagcaatgctgagacttccacatatataatcc |
247 |
Q |
| |
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|||||||| |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30088696 |
tcaatggagcctaactttgagttttcacttcttctcataatttctctttggcttctattaacctttcatagcaatgctgagacttccacatatataatcc |
30088597 |
T |
|
| Q |
248 |
atatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacattagtacctgatga |
347 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
30088596 |
atatgaacaaatccttctttcctcaagtcttcacaaatcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacactagtacttgatga |
30088497 |
T |
|
| Q |
348 |
ttatgaccaa------gcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatcttcaaatgag |
441 |
Q |
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| |||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||| |
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| T |
30088496 |
tcatgatcaacaagaagcatcaaagcaatcacagaagaaactagtgtacacctatgataatgccatgtatggattttgtgcaatgttatcttcaaatgag |
30088397 |
T |
|
| Q |
442 |
ttagagattcttaagaacattgatggctttgttgcagcatatcaagatagaacagctaccattgacacaactcatacctttgaatttctttcactagatt |
541 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
30088396 |
ttagagattattaagaacattgatggctttgtttcagcatatcaagatagaacagcaaccattgacacaactcacacctttgaatttctctccctagatt |
30088297 |
T |
|
| Q |
542 |
ctccaaatggactatggtatacttcagattttggagacgatgtcgttgttggtgttattgatactggtctgtg |
614 |
Q |
| |
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|||||| ||| |||||| || ||||| |||||||||| || || ||||||||||||| ||| ||||| |||| |
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|
| T |
30088296 |
ctccaagtggtctatggcatgcttcaaattttggagatgacatcattgttggtgttatagattctggtgtgtg |
30088224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 149 - 602
Target Start/End: Complemental strand, 30092656 - 30092194
Alignment:
| Q |
149 |
caatggaacctaacaatgtgttttcacttcttctcataatttctctttggtttctattaacctttcatagcaatgctgagacttccacatatataatcca |
248 |
Q |
| |
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||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30092656 |
caatggagcctaactttatgttttcacttcttctcataatttctctttggcttctattaacctttcatagcaatgctgagacttccacatatataatcca |
30092557 |
T |
|
| Q |
249 |
tatgaacaaatcattctttcctcaagtcttcacaactcatcatgattggttcaaatccaccattcattccttaaaatcaaaaacattagtacctgatgat |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
30092556 |
tatgaacaaatccttctttcctcaagtcttcacaaatcatcatgattggttcaaatctaccattcattccttaaaatcaaaaacattagtgcttgatgat |
30092457 |
T |
|
| Q |
349 |
tatgacc---------aagcatcaaagcaatcacagaagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatcttcaaatg |
439 |
Q |
| |
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|||| | ||||||||| ||||||||||||| |||| || |||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |
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| T |
30092456 |
catgatcaacaagaagaagcatcaatgcaatcacagaagcaactagtatacacctatgataatgccatgtatggatttagtgcattgttatcttcaaatg |
30092357 |
T |
|
| Q |
440 |
agttagagattcttaagaacattgatggctttgttgcagcatatcaagatagaacagctaccattgacacaactcatacctttgaatttctttcactaga |
539 |
Q |
| |
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||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| || ||||| |
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| T |
30092356 |
agttagagactcttaacaacactgatggctttgttgcagcatatcaagacagaacagcaaccatggacacaactcacacctttgaatttctctccctaga |
30092257 |
T |
|
| Q |
540 |
ttctccaaatggactatggtatacttcagattttggagacgatgtcgttgttggtgttattga |
602 |
Q |
| |
|
|||||||| ||| |||||| || ||||| |||| ||||||||| || || ||||||||||||| |
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|
| T |
30092256 |
ttctccaagtggtctatggcatgcttcaaatttcggagacgatatcattattggtgttattga |
30092194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 602
Target Start/End: Complemental strand, 35172049 - 35171823
Alignment:
| Q |
376 |
aagaaactggtgtacacctatgatcatgccatgtatggctttagtgcagtgttatcttcaaatgagttagagattcttaagaacattgatggctttgttg |
475 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||| || |||||||| ||||| |||| |||||||| | || || || | |||| ||||| |
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| T |
35172049 |
aagaaattggtgtacacctacaatcatgccatgcatggattcagtgcagtcttatcaccaaaagagttagacaacctcaaaaaatctcatggttttgtca |
35171950 |
T |
|
| Q |
476 |
cagcatatcaagatagaacagctaccattgacacaactcatacctttgaatttctttcactagattctccaaatggactatggtatacttcagattttgg |
575 |
Q |
| |
|
|||| || | || |||||||| || || |||||||| || |||||||| ||||||||| |||| || | || ||||||||| || | ||| |||| || |
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|
| T |
35171949 |
cagcttaccctgacagaacagcaacaatagacacaacacacacctttgagtttctttcattagacccttccaaaggactatggaatgcatcaaatttagg |
35171850 |
T |
|
| Q |
576 |
agacgatgtcgttgttggtgttattga |
602 |
Q |
| |
|
||| |||| |||||||||||||||| |
|
|
| T |
35171849 |
agaaaatgttattgttggtgttattga |
35171823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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