View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16719_low_22 (Length: 241)
Name: NF16719_low_22
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 10144162 - 10144370
Alignment:
| Q |
18 |
gttttttgtctcttatttaaggtgcatttctatgtggatcaaacaatcaactttggaaaaataatttagtaatttggaacttagttttgcactcacttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10144162 |
gttttttgtctcttatttaaggtgcatttctatgtggatcaaacaatcaactttgggaaaataatttagtaagatggaacttagttttgcactcacttgt |
10144261 |
T |
|
| Q |
118 |
agagtgcattttataagactttattttcagattttgtttcttaagagagttgaactttttgattaattgttagtgattagaattttgtgtatggtatggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10144262 |
agagtgcattttataagactttattttcagattttgtttcttaagagagttgaactttttgattaattgttagtgatcagaattttgtgtatggtatggt |
10144361 |
T |
|
| Q |
218 |
tgtataaaa |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
10144362 |
tgtataaaa |
10144370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 13555222 - 13555389
Alignment:
| Q |
53 |
ggatcaaacaatcaactttggaaaaataatttagtaatttggaacttagttttgcactcacttgtagagtgcatttta-taagact-ttattttcagatt |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
|
|
| T |
13555222 |
ggatcaaacaatcagctttggaaaaataatttagcaagatggagcttagttttgcactcaattgtagggtgcattttattaagactattattttcggatt |
13555321 |
T |
|
| Q |
151 |
ttgtttcttaagagagttgaactttttgattaattgttagtgattagaattttgtgtatggtatggtt |
218 |
Q |
| |
|
| |||||| ||||||| |||||||||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
13555322 |
tcatttcttgagagagtggaactttttggttaattgttattgatcttaattttgtgtttcgtatggtt |
13555389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 13671343 - 13671176
Alignment:
| Q |
53 |
ggatcaaacaatcaactttggaaaaataatttagtaatttggaacttagttttgcactcacttgtagagtgcatttta-taagact-ttattttcagatt |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
|
|
| T |
13671343 |
ggatcaaacaatcagctttggaaaaataatttagcaagatggagcttagttttgcactcaattgtagggtgcattttattaagactattattttcggatt |
13671244 |
T |
|
| Q |
151 |
ttgtttcttaagagagttgaactttttgattaattgttagtgattagaattttgtgtatggtatggtt |
218 |
Q |
| |
|
| |||||| ||||||| |||||||||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
13671243 |
tcatttcttgagagagtggaactttttggttaattgttattgatcttaattttgtgtttcgtatggtt |
13671176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 11904099 - 11903932
Alignment:
| Q |
53 |
ggatcaaacaatcaactttggaaaaataatttagtaatttggaacttagttttgcactcacttgtagagtgcatttta-taagact-ttattttcagatt |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
|
|
| T |
11904099 |
ggatcaaacaatcagctttggaaaaataatttagcaagatggagcttagttttgcactcaattgtagggtgcattttattaagactattattttcggatt |
11904000 |
T |
|
| Q |
151 |
ttgtttcttaagagagttgaactttttgattaattgttagtgattagaattttgtgtatggtatggtt |
218 |
Q |
| |
|
| |||||| ||||||| |||||||||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
11903999 |
tcatttcttgagagagtggaactttttggttaattgttattgatcttaattttgtgtttcgtatggtt |
11903932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 30522231 - 30522398
Alignment:
| Q |
53 |
ggatcaaacaatcaactttggaaaaataatttagtaatttggaacttagttttgcactcacttgtagagtgcatttta-taagact-ttattttcagatt |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
|
|
| T |
30522231 |
ggatcaaacaatcagctttggaaaaataatttagcaagatggagcttagttttgcactcaattgtagggtgcattttattaagactattattttcggatt |
30522330 |
T |
|
| Q |
151 |
ttgtttcttaagagagttgaactttttgattaattgttagtgattagaattttgtgtatggtatggtt |
218 |
Q |
| |
|
| |||||| ||||||| |||||||||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
30522331 |
tcatttcttgagagagtggaactttttggttaattgttattgatcttaattttgtgtttcgtatggtt |
30522398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 28873909 - 28873980
Alignment:
| Q |
117 |
tagagtgcattttataagact-ttattttcagattttgtttcttaagagagttgaactttttgattaattgt |
187 |
Q |
| |
|
||||||||||||||| || || || ||||||||||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
28873909 |
tagagtgcattttattaggctattgatttcagattttgtttattaagagagtggaactttttggttaattgt |
28873980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University