View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_23 (Length: 230)
Name: NF16719_low_23
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 29282542 - 29282351
Alignment:
| Q |
24 |
gcagactaatgggagctaccctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaaaa |
123 |
Q |
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| T |
29282542 |
gcagactaatgggagctatactacacttaaaaggattcactagagttatggcattgttatcatccaccaatgcaagccaaccatggctacagcctaaaca |
29282443 |
T |
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| Q |
124 |
caatttcattgtattgatggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
215 |
Q |
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| T |
29282442 |
caatttcattgtattgatggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
29282351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 29270166 - 29269982
Alignment:
| Q |
24 |
gcagactaatgggagctaccctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaaaa |
123 |
Q |
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| T |
29270166 |
gcagactaatgggagctatactgctcttaaaaggattcactagagttatggcattgtttttatccactagtgcaagccaaccatggctacaacctaaaca |
29270067 |
T |
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| Q |
124 |
caatttcattgtattgatggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttcttt |
208 |
Q |
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| T |
29270066 |
tgttttacttttaatgatggaaggatgggataactgaatagggtactctttcgcacttgggatactatataatgatttcatcttt |
29269982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 29279541 - 29279375
Alignment:
| Q |
52 |
aaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcc---caaaaacaatttcattgtattgatggaagga |
148 |
Q |
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| T |
29279541 |
aaaaggattcactagagttatgacattgttatcgtctactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
29279442 |
T |
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| Q |
149 |
tgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
215 |
Q |
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| T |
29279441 |
tgggataattgaatagggtactctttctcacttagaatactatacaacgatctcttcttcgtctgtg |
29279375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 29287991 - 29287896
Alignment:
| Q |
26 |
agactaatgggagctaccctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaa |
121 |
Q |
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| T |
29287991 |
agactaatgggagctatactgctcttaaaaggattcactagagttatagcattgttattatccactagtgcaagccaaccatggctacaacccaaa |
29287896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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