View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16719_low_24 (Length: 224)
Name: NF16719_low_24
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 41015589 - 41015777
Alignment:
| Q |
20 |
gttatctgtttcttgcagcacccttggatccaaatccattaactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41015589 |
gttatctgtttcttgcagcacccttggatccaaatccattaactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgt |
41015688 |
T |
|
| Q |
120 |
tttaatcatgcgaagtttttaaaatatatacacaatcatatgcttatcatgctggtttattttgtacaagcttttgttatgctccctat |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41015689 |
tttaatcatgcaaagtttttaaaatatatacacaatcatatgcttatcatgctggtttattttgtacaagcttctgttatgctccctat |
41015777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University