View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_4 (Length: 464)
Name: NF16719_low_4
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 292 - 445
Target Start/End: Original strand, 2530831 - 2530983
Alignment:
| Q |
292 |
ctttgttgacacttgaattgaccaacaaaagtttacctcaacatgatgagtgagtattggtttcacacatgatgaagaaagaacagaaaaattaagcaag |
391 |
Q |
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| T |
2530831 |
ctttgttgacacttgaattgaccaacaaaagtttacctcaaaatgatgagtgagtcttggtttcacacatgatgaagaaagaacagaaaaattaagcaag |
2530930 |
T |
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| Q |
392 |
aagattatggtaagaacatttgaagaaatgtactattgatttgtttgactatga |
445 |
Q |
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| T |
2530931 |
aagattatggtaagaacatttgaagaaatgtactattga-ttgtttgactatga |
2530983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 2530551 - 2530757
Alignment:
| Q |
12 |
agagagaagaaggttgaaataggacataaacatgttcatagccatacatgttttaacatgagtttgtatnnnnnnnnnnnnncaactttttaaggtggat |
111 |
Q |
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| T |
2530551 |
agagagaagagggttgaaataggacataaacatgttcatagccatacatgttttaacatgagtttgtat-aaaaaacaaaaacaactttttaaggtggat |
2530649 |
T |
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| Q |
112 |
tttctaccttgaccacatagtggaaaagcaatatggcataaac-nnnnnnntggaattcatgaatatgatagaagagggttgaattatgttatcttggtt |
210 |
Q |
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| T |
2530650 |
tttctaccttgaccacatagtggaaaagcaatatggcataaacaaaaaaaatggaattcatgaatatgatagaagagggttgaattatgttatcttggtt |
2530749 |
T |
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| Q |
211 |
acatagtg |
218 |
Q |
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| T |
2530750 |
acatagtg |
2530757 |
T |
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