View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_6 (Length: 416)
Name: NF16719_low_6
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 187 - 399
Target Start/End: Original strand, 11359677 - 11359889
Alignment:
| Q |
187 |
ggttgctttgcttcagttttgttataaactagtttatccataatttagacctatgtataattatgtcgtgttcgtagttttcttgacacatggttatcct |
286 |
Q |
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| T |
11359677 |
ggttgctttgcttcagttttgttataaactagtttatccataatttagacctatgtataattatgtggtgttcgtagttttcttgacacatggttatcct |
11359776 |
T |
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| Q |
287 |
atctatttcagatagtgagctttttgttaagctatgcatctatgaatgtcaatgcaatcaataatcagcaagaagcagccttggatttggcagataaact |
386 |
Q |
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| T |
11359777 |
atctatttcagatagtgagctttttgttaagctatgcatctatgaatgtcaatgcaatcaataatcagcaagaaacagccttggatttggcagataaact |
11359876 |
T |
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| Q |
387 |
tccgtacggagat |
399 |
Q |
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| T |
11359877 |
tccgtacggagat |
11359889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11359134 - 11359324
Alignment:
| Q |
1 |
ggtcaaacagcacttcatatggctgtaaaaggacagtgtacttcagtagtggaggagatattacaagctgacccgatggtattaaacgaaaaagataaga |
100 |
Q |
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| T |
11359134 |
ggtcaaacagcacttcatatggctgtaaaaggacagtgtacttcagtagtggaggagatattacaagctgacccgatggtattaaacgaaaaagataaga |
11359233 |
T |
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| Q |
101 |
agggtaatacagctcttcacatggctactcggaaagctcgttcgcaggtcaattaaaccatatttgatttctgttttttaccacatggttg |
191 |
Q |
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| T |
11359234 |
agggtaatacagctcttcacatggctactcggaaagctcgttcgcaggtcaattaaaccatatttgatttctgttttttaccacatggttg |
11359324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 44398167 - 44398302
Alignment:
| Q |
1 |
ggtcaaacagcacttcatatggctgtaaaaggacagtgtacttcagtagtggaggagatattacaagctgacccgatggtattaaacgaaaaagataaga |
100 |
Q |
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|||||||| || || ||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||| || | |||| |||||| |||||||| |
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| T |
44398167 |
ggtcaaactgcgctacatatggctgtcaaaggacagagtacgtcagtggtggaggagatattacaagctgatcctactatattgaacgaacgagataaga |
44398266 |
T |
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| Q |
101 |
agggtaatacagctcttcacatggctactcggaaag |
136 |
Q |
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| T |
44398267 |
agggtaataccgctcttcacatggctacgcggaaag |
44398302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 44398943 - 44399035
Alignment:
| Q |
294 |
tcagatagtgagctttttgttaagctatgcatctatgaatgtcaatgcaatcaataatcagcaagaagcagccttggatttggcagataaact |
386 |
Q |
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|||||||||||||| |||| ||||||||||| || || |||| ||||| |||||||| || |||||| ||||||||||||||||||||||||| |
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| T |
44398943 |
tcagatagtgagctatttgctaagctatgcagctgtggatgttaatgccatcaataagcaacaagaaacagccttggatttggcagataaact |
44399035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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