View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_7 (Length: 389)
Name: NF16719_low_7
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 47716962 - 47717320
Alignment:
| Q |
15 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttctatatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47716962 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttctatatc |
47717061 |
T |
|
| Q |
115 |
ttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataactattggcttccatttttctttgccatctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717062 |
ttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataactattggcttccatttttctttgccatctg |
47717161 |
T |
|
| Q |
215 |
tctcttttggaattactgcttctaggttttctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaa |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717162 |
tctcttttggaattactgcttctaggttgtctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaa |
47717261 |
T |
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| Q |
315 |
attatcctgcattcataccacgacttagacagtctaacaaatttaggaaaggtcacata |
373 |
Q |
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| T |
47717262 |
attatcctgcatccataccacgacttagacagtctaacaaatttaggaaaggtcacata |
47717320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 47744755 - 47745086
Alignment:
| Q |
15 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttct---at |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| || |
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| T |
47744755 |
tattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgacgcagtgatttcaatatcattattttcatcttcttttat |
47744854 |
T |
|
| Q |
112 |
atcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataactattggcttccatttttctttgccat |
211 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| | |
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| T |
47744855 |
atcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaacattgtacaaa----ggcttccatttttctttgcctt |
47744950 |
T |
|
| Q |
212 |
ctgtctcttttggaattactgcttctaggttttctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcgtc |
311 |
Q |
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|||||| |||| |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47744951 |
ctgtctatttttgaattactgcatctaggttttctctttttgaatgcaaaactttgttaaccatcacaacttattattatgaagtagattttatgtcgtc |
47745050 |
T |
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| Q |
312 |
aaaattatcctgcattcataccacgacttagacagt |
347 |
Q |
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| T |
47745051 |
aaaattatcctgcattcataccacgacttagacagt |
47745086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 47712207 - 47712524
Alignment:
| Q |
15 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcat---cttctat |
111 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
47712207 |
tattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcagcgatttcaatatcatcattatcattttcttctat |
47712306 |
T |
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| Q |
112 |
atcttcaaacaatgtacaaggcatgttag--------------aaaaatatgctaatatctaatttttaaaatcaaaatacttataactattggcttcca |
197 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||| |
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| T |
47712307 |
ttcttcaaacatgatacaaggcatgttagtaaagtaaaaatagaaaaatatgctaatatctaatttttaaaataaaaaaacttatgactattggcgtcca |
47712406 |
T |
|
| Q |
198 |
tttttctttgcc-atctgtctcttttggaattactgcttctaggttttctctatttgaatgcaaaactctgttaaccatcacaacttattat--tatgaa |
294 |
Q |
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||||||||| || | | ||| |||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
47712407 |
tttttctttccctttttttctatttttgaattattgcatctaggttttctctatttgaatgcaaaa---tgttaaccatcacaacttattattatatgaa |
47712503 |
T |
|
| Q |
295 |
gtaaattttatgtcgtcaaaa |
315 |
Q |
| |
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||| |||||||||| |||||| |
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| T |
47712504 |
gtagattttatgtcttcaaaa |
47712524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 47759105 - 47759233
Alignment:
| Q |
15 |
tattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttct---at |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| || |||||||||| ||| || |||||| || |
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| T |
47759105 |
tattagcttcagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgat |
47759204 |
T |
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| Q |
112 |
atcttcaaacaatg-tacaaggcatgttag |
140 |
Q |
| |
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|||||||| |||| ||||||||||||||| |
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| T |
47759205 |
ttcttcaaa-aatgatacaaggcatgttag |
47759233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 47759276 - 47759413
Alignment:
| Q |
219 |
ttttggaattactgcttctaggttttctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcg-------tc |
311 |
Q |
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|||| |||||||| | ||||| |||| | ||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||| ||| || |
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| T |
47759276 |
tttttgaattactacatctagttttttt-tatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactc |
47759374 |
T |
|
| Q |
312 |
aaaattatcctgcattcataccacgacttagacagtcta |
350 |
Q |
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|||||||||||| |||||||||||| |||||||||||| |
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| T |
47759375 |
aaaattatcctgagttcataccacgatttagacagtcta |
47759413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 333
Target Start/End: Original strand, 47713816 - 47714004
Alignment:
| Q |
155 |
atctaatttttaaaatcaaaatacttataactattggcttccatttttctttgccatctgtctcttttggaatta---------ctgcttctaggttttc |
245 |
Q |
| |
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|||||||||||| |||||||| |||||| |||| |||||| ||||||||||| || ||| ||| |||| |||||| |||| |||||||||| |
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| T |
47713816 |
atctaatttttataatcaaaacacttatgactaatggcttgcatttttctttcccttctttctatttttgaattattactattactgcatctaggttttt |
47713915 |
T |
|
| Q |
246 |
tctatttgaatgcaaaactctgttaaccatcaca--acttattattatgaagtaaattttatgtcgtcaaaattat--cctgcattcatacc |
333 |
Q |
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| T |
47713916 |
tatatttgaaagcaacgctttgttaatcatcacacaacttattattatgaag---attttatgtcgtcaaaactatagcctgcattcatacc |
47714004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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