View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_8 (Length: 376)
Name: NF16719_low_8
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 6126797 - 6127136
Alignment:
| Q |
16 |
ccaaccacaagccaataacacatgtcaaaacctcaaagagatagagagagtaaaatgggttttgaaatgagggtatatggttggattgcaattgccattt |
115 |
Q |
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| T |
6126797 |
ccaaccacaagccaataacacatgtcaaaacctcaaagagatagagagagtaaaatgggttttgaaatgagggtatatggttggattgcaattgccattt |
6126896 |
T |
|
| Q |
116 |
ctattgcaatttgtctctgtccatgcctctctttagaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccc |
215 |
Q |
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| T |
6126897 |
ctattgcaatttgtctctgtccatgcctctctttagaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccc |
6126996 |
T |
|
| Q |
216 |
tctttacgattcttcaacatgtcctcatattcgtttggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaacca |
315 |
Q |
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| T |
6126997 |
tctttacgattcttcaacatgtcctcatattcgtttggagtatgattgtttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaacca |
6127096 |
T |
|
| Q |
316 |
agcacttgtgacttaccaaggtacacattcattaaacttt |
355 |
Q |
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| T |
6127097 |
agcacttgtgacttaccaaggtacacattcattaaacttt |
6127136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 58 - 338
Target Start/End: Complemental strand, 13286730 - 13286462
Alignment:
| Q |
58 |
agagagagtaaaatgggttttgaaatgagggtatatggttggattgcaattgccatttctattgcaatttgtctctgtccatgcctctctttagaagaaa |
157 |
Q |
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| T |
13286730 |
agagagagtaagatggatgttgaaatgagggtatatggttggattgcaattgccatttctatggtaatttgtctct------------ctttggaagaaa |
13286643 |
T |
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| Q |
158 |
ctaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctcatattcgtttggagta |
257 |
Q |
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| T |
13286642 |
ctaatggagaaagttgcaatttatatgaagggagttgggtgtatgatgaatcatatcctctttatgattcttcaacatgccctcatgttcgtgaggagtt |
13286543 |
T |
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| Q |
258 |
tgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttaccaaggta |
338 |
Q |
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| T |
13286542 |
aaattgcttgaagtatggtcgtcttgataagcaatacctcaaatatagatggcaaccaagcaattgtaacttaccaaggta |
13286462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 58 - 338
Target Start/End: Original strand, 6135913 - 6136181
Alignment:
| Q |
58 |
agagagagtaaaatgggttttgaaatgagggtatatggttggattgcaattgccatttctattgcaatttgtctctgtccatgcctctctttagaagaaa |
157 |
Q |
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| T |
6135913 |
agagatagtaagatggatgttgaaatgagggtatatggttggattgcaattgccatttctatggtaatttgtctct------------ctttgaaagaaa |
6136000 |
T |
|
| Q |
158 |
ctaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctcatattcgtttggagta |
257 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
6136001 |
ctaatggagaaagttgcaatttatatgaagggagttgggtgtatgatgaatcatatcctctttatgattcttcaacatgtcctcatgttcgtgaggagtt |
6136100 |
T |
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| Q |
258 |
tgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttaccaaggta |
338 |
Q |
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|||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
6136101 |
aaattgcttgaagtatggtcgtcttgataagcaatacctcaaatatagatggcaaccaagcaattgtaacttaccaaggta |
6136181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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