View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16719_low_9 (Length: 368)
Name: NF16719_low_9
Description: NF16719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16719_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 43438622 - 43438286
Alignment:
| Q |
13 |
atcatcatagtttcttcttcttcttctcctttacctctaatggcaccatacctcatatcctaaaaacataaactcatcattcacacatctttccattcct |
112 |
Q |
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| T |
43438622 |
atcatcatagtttcttcttc---ttctcctttacctctaatggcaccatacctcatatcctaaaaacataaactcatcattcacccatctttccattcct |
43438526 |
T |
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| Q |
113 |
tttctctcttcctatcacatccacaaaaatgaaacccttgtatagcacaaacactctcttactcctcctttcactattcctcctccacttagcaccatac |
212 |
Q |
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| T |
43438525 |
tttctctcttcctatcacatccacaaaaatgaaacccttgtatagcacaaacactctcttactcctcctttcactattcctcctccacttagcaccatac |
43438426 |
T |
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| Q |
213 |
ctttctgcttcatcttctcaaagagacccaacttcacaacttctcaactttaaacaatctctcccaaacccatctcttctccataactggctcccaaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43438425 |
ctttctgcttcatcttctcaaagagacccaacttcacaacttctcaactttaaacaatctctcccaaacccatctcttctccataactggctcccaaata |
43438326 |
T |
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| Q |
313 |
ataacccatgttcattcactggtatcacctgcaaccaaac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43438325 |
ataacccatgttcattcactggtatcacctgcaaccaaac |
43438286 |
T |
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