View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_12 (Length: 400)
Name: NF16720_high_12
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 12692153 - 12692535
Alignment:
| Q |
1 |
tttagtttgaaatatatgggactaaaccaatacaagtattttagtttgaaatattaattctttaattaaattaacgaggggatattgttagctcattgcc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692153 |
tttagtttgaaatatgtgggactaaaccaatacaagtattttagtttgaaatattaattctttaattaaattaacgaggggatattgttagctcattgcc |
12692252 |
T |
|
| Q |
101 |
cgtcaccggaacataatcacatcatccctttcatacctacaactgacaaagaaaccaatgtaaagaacaccgacgagatcgacaaacacttgttaactca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692253 |
cgtcaccggaacataatcacatcatccctttcatacctacaactgacaaagaaaccaatgtaaagaacaccgacgagatcgacaaacacttgttaactca |
12692352 |
T |
|
| Q |
201 |
gtcactatatcaacgtccatgtgatgtgtccatgagacactgaacgtcttcgacattgttgattctagatatgactaagatgggttgcctcgagcaaaaa |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12692353 |
gtcactatatcaacgtccatgtgatgcgtccatgagacactgaacgtcttcgacattgttgattctggatatgactaagatgggttgcctcgagcaaaaa |
12692452 |
T |
|
| Q |
301 |
attcttgtatagtactcttctgcaatgaaggaaaccaacggttatgacctccccttcatcgagccgatcaactatgtgaattc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692453 |
attcttgtatagtactcttctgcaatgaaggaaaccaacggttatgacctccccttcatcgagccgatcaactatgtgaattc |
12692535 |
T |
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