View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_13 (Length: 386)
Name: NF16720_high_13
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 48 - 384
Target Start/End: Original strand, 1621392 - 1621728
Alignment:
| Q |
48 |
ctctttgcttctctattttcgacttgatgccgcatttgcatcctgagcacgtgcagattgggatttgttggtaatttgccaactcatcccaaagcatctt |
147 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1621392 |
ctctttgcttctctaatttcgacttgatgccgcatttgcatcctgagcacgtgcagattgggatttgttggtaatttgccaactcatcccaaagcatctt |
1621491 |
T |
|
| Q |
148 |
gagttttccatagtaattcaccatggccattccttcttgtttacattgtgccagatccgatttcaattgttggatcctaggtccattcacatttgagaat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1621492 |
gagttttccatagtaattcaccatggccattccttcttgtttacattgtgccagatccgatttcaattgttggatcctaggtccattcacaattgagaat |
1621591 |
T |
|
| Q |
248 |
cgttctttgatgtcttcccacagttcctttgcattctccatataagagatggtcgaacgcaaagttggatctatagtgttcaggatccaagacacgagca |
347 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1621592 |
cgttctttgatgtcttcccacaattcctttgcattctccatataagagatggtcgatcgcaaagttggatctatagtgttcaggatccaagacacgagca |
1621691 |
T |
|
| Q |
348 |
tagattgcacggtccaccaatcgttcatttcagtcga |
384 |
Q |
| |
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||||||| |||||||||||||| | |||||| ||||| |
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| T |
1621692 |
tagattgtacggtccaccaatcctccatttctgtcga |
1621728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 48 - 384
Target Start/End: Complemental strand, 6380361 - 6380025
Alignment:
| Q |
48 |
ctctttgcttctctattttcgacttgatgccgcatttgcatcctgagcacgtgcagattgggatttgttggtaatttgccaactcatcccaaagcatctt |
147 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6380361 |
ctctttgcttctctaatttcgacttgatgccgcatttgcatcctgagcacgtgcagattgggatttgttggtaatttaccaactcatcccaaagcatctt |
6380262 |
T |
|
| Q |
148 |
gagttttccatagtaattcaccatggccattccttcttgtttacattgtgccagatccgatttcaattgttggatcctaggtccattcacatttgagaat |
247 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6380261 |
gagttttccatagtaattcaccatggccattccttcttgtttacattgtgccagatccgatttcaattgttggatcctaggtccattcacaattgagaat |
6380162 |
T |
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| Q |
248 |
cgttctttgatgtcttcccacagttcctttgcattctccatataagagatggtcgaacgcaaagttggatctatagtgttcaggatccaagacacgagca |
347 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6380161 |
cgttctttgatgtcttcccacaattcctttgcattctccatataagagatggtcgatcgcaaagttggatctatagtgttcaggatccaagacacgagca |
6380062 |
T |
|
| Q |
348 |
tagattgcacggtccaccaatcgttcatttcagtcga |
384 |
Q |
| |
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||||||| |||||||||||||| | |||||| ||||| |
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| T |
6380061 |
tagattgtacggtccaccaatcctccatttctgtcga |
6380025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 378
Target Start/End: Complemental strand, 14798485 - 14798220
Alignment:
| Q |
113 |
tgttggtaatttgccaactcatcccaaagcatcttgagttttccatagtaattcaccatggccattccttcttgtttacattgtgccagatccgatttca |
212 |
Q |
| |
|
|||||||||||| ||| |||||||| | || |||||||||||||||||| |||||||||| ||||||| |||||||||||| || || | ||||||| |
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| T |
14798485 |
tgttggtaatttcccagttcatcccataacaccttgagttttccatagtagttcaccatggacattcctccttgtttacattcagcaagttttgatttca |
14798386 |
T |
|
| Q |
213 |
attgttggatcctaggtccattcacatttgagaatcgttctttgatgtcttcccacagttcctttgcattctccatataagagatggtcgaacgcaaagt |
312 |
Q |
| |
|
|||||| ||||| || || ||| || ||||||||| ||||| |||| ||||| ||||||||||| ||||||||||| || || || ||||||| || |
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| T |
14798385 |
gttgttgaatccttggcccgttcgcaactgagaatcgctctttaatgttgtcccaaagttcctttgcgttctccatataggaaatagtagaacgcagaga |
14798286 |
T |
|
| Q |
313 |
tggatctatagtgttcaggatccaagacacgagcatagattgcacggtccaccaatcgttcatttc |
378 |
Q |
| |
|
| || || ||||| | |||||||||||| | ||| ||||| || |||||| |||| | |||||| |
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|
| T |
14798285 |
agcttcaatggtgtttaagatccaagacaccaccatcgattggacagtccactaatcctccatttc |
14798220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 378
Target Start/End: Complemental strand, 14807359 - 14807094
Alignment:
| Q |
113 |
tgttggtaatttgccaactcatcccaaagcatcttgagttttccatagtaattcaccatggccattccttcttgtttacattgtgccagatccgatttca |
212 |
Q |
| |
|
|||||||||||| ||| |||||||| | || |||||||||||||||||| |||||||||| ||||||| |||||||||||| || || | ||||||| |
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| T |
14807359 |
tgttggtaatttcccagttcatcccataacaccttgagttttccatagtagttcaccatggacattcctccttgtttacattcagcaagttttgatttca |
14807260 |
T |
|
| Q |
213 |
attgttggatcctaggtccattcacatttgagaatcgttctttgatgtcttcccacagttcctttgcattctccatataagagatggtcgaacgcaaagt |
312 |
Q |
| |
|
|||||| ||||| || || ||| || ||||||||| ||||| |||| ||||| ||||||||||| ||||||||||| || || || ||||||| || |
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|
| T |
14807259 |
gttgttgaatccttggcccgttcgcaactgagaatcgctctttaatgttgtcccaaagttcctttgcgttctccatataggaaatagtagaacgcagaga |
14807160 |
T |
|
| Q |
313 |
tggatctatagtgttcaggatccaagacacgagcatagattgcacggtccaccaatcgttcatttc |
378 |
Q |
| |
|
| || || ||||| | |||||||||||| | ||| ||||| || |||||| |||| | |||||| |
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| T |
14807159 |
agcttcaatggtgtttaagatccaagacaccaccatcgattggacagtccactaatcctccatttc |
14807094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 23118802 - 23118759
Alignment:
| Q |
4 |
ttcacaacccaacaggttacgaagttgtctcatctattcatctc |
47 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23118802 |
ttcacaacccaacaggttactaagttgtctcatctattcatctc |
23118759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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