View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_18 (Length: 318)
Name: NF16720_high_18
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 41562416 - 41562126
Alignment:
| Q |
18 |
aagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttcggaatcatcgatgaatcccttatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41562416 |
aagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttcggaatcgtcgatgaatcccttatc |
41562317 |
T |
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| Q |
118 |
gtctttaccaaacttgttgaaggttaacttgtcatgcaaggaaagtggtcctatacaccaaacctttttagcaactttctcataacctctaacataaacc |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41562316 |
gtctttaccaaacttgttgaaggttaacctgtcatgcaaggaaagtggtcctatacaccaaacctttttagcaactttctcataacctctaacataaacc |
41562217 |
T |
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| Q |
218 |
ttctccagctcctcaaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41562216 |
ttctccagctcctcaaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg |
41562126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 46657001 - 46656889
Alignment:
| Q |
18 |
aagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttcggaatcatcgatgaatcccttatc |
117 |
Q |
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|||| |||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
46657001 |
aagacaaactaccaaaacatgcatatatgacagagcaagctttgtttcaaataaaaaactttagacatttggtttcagaatcattgatgcatcccttatc |
46656902 |
T |
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| Q |
118 |
gtctttaccaaac |
130 |
Q |
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|| |||||||||| |
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| T |
46656901 |
gtttttaccaaac |
46656889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 46656852 - 46656776
Alignment:
| Q |
232 |
aaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg |
308 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46656852 |
aaaagtattcaccaatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg |
46656776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 46656890 - 46656862
Alignment:
| Q |
174 |
accaaacctttttagcaactttctcataa |
202 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46656890 |
accaaacctttttagcaactttctcataa |
46656862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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