View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_19 (Length: 283)
Name: NF16720_high_19
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 23311999 - 23311739
Alignment:
| Q |
1 |
ttccctgttcaaactcttgcgaaatgtgctaaaatgatacctgttatggtaggtcaaagttcaatattgtgccagattataatctcttcttgttttaata |
100 |
Q |
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| T |
23311999 |
ttccctgttcaaactcttgcgaaatgtgctaaaatgatacctgttatggtaggtcaaagttcaatattgtgccagattataatctcttcttgttttaata |
23311900 |
T |
|
| Q |
101 |
gttgtgattactggttgtttgttatgttaatcacattgattgctgatatattctagtatttaattatttgtactttattttcattttctcagctactgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23311899 |
gttgtgattactggttgtttgttatgttaatcacattgattgctgatatattctagtatttaattatttgtactttattttcattttctcagctactgtt |
23311800 |
T |
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| Q |
201 |
gtttctattgatgaagaatagcaccaattgctttgtgttgttcatttttgcttgaacatag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23311799 |
gtttctattgatgaagaatagcaccaattgctttgtgttgttcatttttgcttgaacatag |
23311739 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 41143461 - 41143410
Alignment:
| Q |
4 |
cctgttcaaactcttgcgaaatgtgctaaaatgatacctgttatggtaggtc |
55 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
41143461 |
cctgttcagactcttgcgaaatgtgcgaaaatgataccagttatggtaggtc |
41143410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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